| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,146,531 – 8,146,633 |
| Length | 102 |
| Max. P | 0.514819 |
| Location | 8,146,531 – 8,146,633 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 80.52 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -14.99 |
| Energy contribution | -16.35 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8146531 102 + 22407834 UCCUCGCUGGAACCACACAAUUAGUACUUAAUAUUUCAACGAAGUGUUGCUAUUCAAAUCGCAAUACAAAGUGGUUCAAUGGUUGCUGCCAAAGACUUUAG----U .....(((((((((((((.....))..................(((((((..........)))))))...)))))))..((((....)))).......)))----) ( -23.50) >DroSec_CAF1 12409 102 + 1 UCCUCGCUGGAACCACACAAUUAGUACUUAAUAUUUCAGCGAAGUGUUGCUAUUCAAACCGCAAUACAAAGUGGUUCAAUGGUUUCUGCCAAAGACCUUAG----U ...(((((((((.....................))))))))).(((((((..........))))))).....((((...((((....))))..))))....----. ( -24.50) >DroSim_CAF1 13285 102 + 1 UCCUCGCUGGAACCACACAAUUAGUACUUAAUAUUUCAACCAAGUGUUGCUAUUCAAACCGCAAUACAAAGUGGUUCAAUGGUUUCUGCCAAAGACCUUAG----U .....(((((((((((((.....))..................(((((((..........)))))))...)))))))..((((....)))).......)))----) ( -23.50) >DroEre_CAF1 12222 102 + 1 UCUUCGCUGAAGCCGCACAAUUAGUACUUAAUAAUUCAACAAAGUGUUGCUAUUCAAACCGCAAUACAGAGUGGUUCAAUGGUUUCUGCCAAAGACCUUAG----U .....(((((((((((..(((((........))))).......(((((((..........)))))))...))))))...((((....))))......))))----) ( -21.10) >DroYak_CAF1 12111 102 + 1 UCCUCGCUGGAACCACACAAUUAGUACUUAAUAGUUCAACAAUGUGUUGCUAUUCAAACCGCAAUACAGAGUGGCUCAAUGGUUUCUGCCAAAGACCUUAG----U .....((((((.((((.......(.(((....))).).....((((((((..........))))))))..)))).))..((((....)))).......)))----) ( -21.80) >DroAna_CAF1 11626 88 + 1 ------------CCACAAAA-----AAUAAAUAGUUU-ACAAAGUGCAGCGGUUCAAAGUCGAGUACAGAGUGGUUCAAUGGCUUCUUAUAGAGUACCUCGCCGAC ------------((((...(-----(((.....))))-.....((((..(((.......))).))))...)))).....((((.................)))).. ( -11.03) >consensus UCCUCGCUGGAACCACACAAUUAGUACUUAAUAUUUCAACAAAGUGUUGCUAUUCAAACCGCAAUACAAAGUGGUUCAAUGGUUUCUGCCAAAGACCUUAG____U .........(((((((((.....))..................(((((((..........)))))))...)))))))..((((....))))............... (-14.99 = -16.35 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:36 2006