| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 813,348 – 813,439 |
| Length | 91 |
| Max. P | 0.846162 |
| Location | 813,348 – 813,439 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 86.93 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -19.00 |
| Energy contribution | -19.96 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 813348 91 + 22407834 -------CCUUUCGGAAGACCGAAGAGGAAGUCUAAAGUAAACGAAGAGUUUUAUUGAGAUCCCCAGGU--CCUCCUGGACCUCCAGAAGGUCUUAUAAU -------((....))((((((.....((..((((.....((((.....)))).....))))..))((((--((....))))))......))))))..... ( -26.80) >DroSec_CAF1 1741 93 + 1 -------CUUUUCGAAAGACCGCAGAGGAAGUUUAAAGUAAACGAAGAGUUUUAUUGAGAUCCCCAGGUCUCCUCCUGGACCUCCAGAAGGUCUUAUAAU -------........((((((...(((((...((((...((((.....))))..))))((((....)))))))))((((....))))..))))))..... ( -24.50) >DroSim_CAF1 1724 93 + 1 -------CCUUUCGAAAGACCGCAGAGGAAGUUUAAAGUAAACGAAGAGUUUUAUUGAGAUCCCCAGGUCUCCUCCUGGACCUCCAGAAGGUCUUAUAAU -------........((((((...(((((...((((...((((.....))))..))))((((....)))))))))((((....))))..))))))..... ( -24.50) >DroEre_CAF1 1749 100 + 1 CAAUUCGCCUUUCAUAAGACCGAAGAGCAAGACUAAAGUAAACGAAGAGUUUUAUUGAGAUCCCCAGGUCUCCGCCUGGACCUCCAAAAGGUCUUAAAAU ..............(((((((.......((((((...(....)....)))))).(((.((...((((((....))))))...)))))..))))))).... ( -23.40) >DroYak_CAF1 1774 99 + 1 CAAUUUGCCUUUCGAAAGACCGGAGAGCAGGACUAGAGUAAACAAAGAGUUUUAUUGAGAUCCGCAGGUCUCCUCCUGGACCUCCAGAAGGU-UUGUAAU ..((..(((((((....))..(((((.(.(((((.....((((.....)))).....)).)))...).)))))..((((....)))))))))-..))... ( -27.30) >consensus _______CCUUUCGAAAGACCGAAGAGGAAGUCUAAAGUAAACGAAGAGUUUUAUUGAGAUCCCCAGGUCUCCUCCUGGACCUCCAGAAGGUCUUAUAAU ...............((((((...((((..((((.....((((.....)))).....))))..(((((......))))).)))).....))))))..... (-19.00 = -19.96 + 0.96)
| Location | 813,348 – 813,439 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 86.93 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -21.42 |
| Energy contribution | -21.62 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 813348 91 - 22407834 AUUAUAAGACCUUCUGGAGGUCCAGGAGG--ACCUGGGGAUCUCAAUAAAACUCUUCGUUUACUUUAGACUUCCUCUUCGGUCUUCCGAAAGG------- .......((((((...))))))..(((((--(((.(((((..((((..((((.....))))...)).))..)))))...))))))))......------- ( -28.60) >DroSec_CAF1 1741 93 - 1 AUUAUAAGACCUUCUGGAGGUCCAGGAGGAGACCUGGGGAUCUCAAUAAAACUCUUCGUUUACUUUAAACUUCCUCUGCGGUCUUUCGAAAAG------- .........((((((((....))))))))(((((.(((((........((((.....))))..........)))))...))))).........------- ( -26.07) >DroSim_CAF1 1724 93 - 1 AUUAUAAGACCUUCUGGAGGUCCAGGAGGAGACCUGGGGAUCUCAAUAAAACUCUUCGUUUACUUUAAACUUCCUCUGCGGUCUUUCGAAAGG------- .........((((((((....))))))))(((((.(((((........((((.....))))..........)))))...)))))..(....).------- ( -27.07) >DroEre_CAF1 1749 100 - 1 AUUUUAAGACCUUUUGGAGGUCCAGGCGGAGACCUGGGGAUCUCAAUAAAACUCUUCGUUUACUUUAGUCUUGCUCUUCGGUCUUAUGAAAGGCGAAUUG .....(((((......(((((((.((.(....)))..)))))))....((((.....))))......)))))((..((((......))))..))...... ( -25.80) >DroYak_CAF1 1774 99 - 1 AUUACAA-ACCUUCUGGAGGUCCAGGAGGAGACCUGCGGAUCUCAAUAAAACUCUUUGUUUACUCUAGUCCUGCUCUCCGGUCUUUCGAAAGGCAAAUUG .......-.((((((((....))))))))(((((.((((..((.....((((.....)))).....))..)))).....))))).((....))....... ( -27.10) >consensus AUUAUAAGACCUUCUGGAGGUCCAGGAGGAGACCUGGGGAUCUCAAUAAAACUCUUCGUUUACUUUAGACUUCCUCUGCGGUCUUUCGAAAGG_______ .....((((((.....(((((((.((.(....)))..)))))))....((((.....))))..................))))))............... (-21.42 = -21.62 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:01 2006