| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,134,625 – 8,134,719 |
| Length | 94 |
| Max. P | 0.701875 |
| Location | 8,134,625 – 8,134,719 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.40 |
| Mean single sequence MFE | -37.52 |
| Consensus MFE | -26.00 |
| Energy contribution | -26.25 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8134625 94 + 22407834 -------------------CAUCGGCAACAGCGAGUGGCUAACACUGCUCUCAUGCGAAACGGGUCGCUCGAUGGUCAUUGAGGACUGCGGCACCUGGCUGUCUGUGCUGAUU -------------------.(((((((((((((((..(......)..)))..........(((((.((.((.(((((......)))))))))))))))))))...))))))). ( -36.70) >DroVir_CAF1 1 91 + 1 ----------------------CGGCAACAGCGACUGACUGGCACUGCUAUUUCGUGAGCUGGGCCUCUCAAUGGUCAUGGACUGCUGUGGCACUUGGCUAUCGGUGCUAAUG ----------------------.(....)(((.(((((.((((..(((((((((((((.(((((...))))..).))))))).....))))))....)))))))))))).... ( -27.70) >DroSec_CAF1 1 113 + 1 GUGUGGUUUUGUGGACUCACAUCGGCAACAGCGAGUGGCUAACACUGCUCUCAUGCGAGACGGGCCGCUCGAUGGUCAUUGAGGACUGCGGCACCUGGCUGUCUGUGCUGAUU (((.((((.....)))))))(((((((.((((((((((((.....(((......))).....)))))))))..((((......))))(((((.....))))))))))))))). ( -42.40) >DroSim_CAF1 1 91 + 1 ----------------UCACAUCGGCAACAGCGAGUGGC------UGCUCUCAUGCGAGACGGGUCGUUCGAUGGUCAUUGAGGACUGCGGCACCUGGCUGUCUGUGCUGAUU ----------------....((((((((((((.((..((------(((((((....))))..((((.((((((....)))))))))))))))..)).)))))...))))))). ( -38.70) >DroYak_CAF1 1 97 + 1 ----------------UCACAUCGGCAACAGCGAAUGGCUUACACUGCUCUCAUGCGAGACGGGUCGCUCGAUGGUCAUUGAGGACUGCGGCACCUGGCUGUCUGUGCUGAUU ----------------....(((((((.(((...((((((....((((((((....))))..((((.((((((....)))))))))))))).....)))))))))))))))). ( -34.20) >DroAna_CAF1 1 100 + 1 -------------GACUCACAUCGGCAGCAGCGCCUGGUUAAUGCCGCUCUCGUGCGAGACGGGUCGCUCGAUUGUCAUCGAUGACUGCGGCACCUGGCUGUCGGUGCUGAUG -------------......((((((((.(.(((((.(((....(((((((((....))))..(((((.(((((....)))))))))))))))))).))).)).).)))))))) ( -45.40) >consensus ________________UCACAUCGGCAACAGCGAGUGGCUAACACUGCUCUCAUGCGAGACGGGUCGCUCGAUGGUCAUUGAGGACUGCGGCACCUGGCUGUCUGUGCUGAUU ....................((((((((((((.............(((......)))...(((((.((.((.(((((......)))))))))))))))))))...))))))). (-26.00 = -26.25 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:31 2006