| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,122,673 – 8,122,768 |
| Length | 95 |
| Max. P | 0.570564 |
| Location | 8,122,673 – 8,122,768 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 81.26 |
| Mean single sequence MFE | -28.28 |
| Consensus MFE | -19.92 |
| Energy contribution | -19.45 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8122673 95 - 22407834 ACCUUUGGUCUGGAGUUACUUGAGGCCGUGCUGACCAACUUCAGUGCCGUGUUUCACGAGGUAUGUUUA-CAAAUCGGCCUAGACGACGA----AUCGAC ....(((((.((..(((.....((((((..((((......))))..)((((...)))).(((.((....-)).)))))))).)))..)).----))))). ( -26.80) >DroVir_CAF1 87985 75 - 1 ACUUUUGGUCUCGAGCUGCUCGAGGCCGUGCUGAGCAACUUUAGCGCAGUAUUCCACGAGGUUAGUUUAACAAAA------------------------- (((((.(((((((((...)))))))))((((((((....))))))))..........))))).............------------------------- ( -24.70) >DroSec_CAF1 78669 95 - 1 ACCUUUGGUCUGGAGUUACUUCAGGCCGUGCUGACCAACUUCAGUGCCGUGUUUCACGAGGUAUGUUUA-CAAAUCGGCUUAGACGACGA----AUCGAC ......(((((((((...)))))))))(..((((......))))..)(((((((..(((.(((....))-)...)))....)))).))).----...... ( -28.20) >DroSim_CAF1 78727 95 - 1 ACCUUUGGUCUGGAGUUACUUGAGGCCGUGCUGACCAACUUCAGUGCCGUGUUUCACGAGGUAUGUUUA-CAAAUUGGCCUAGACAACGG----AUCGAC ....((((((((..(((.....((((((..((((......))))..)((((...))))..(((....))-).....))))).)))..)))----))))). ( -30.50) >DroEre_CAF1 79190 96 - 1 ACCUUUGGUCUGGAGUUACUUGAGGCCGUGCUGACCAACUUCAGUGCCGUGUUUCACGAGGUAUGUUUA-CAAAUCGGCAGAGAA---GUGUCAAUUGUC ......(((((.(((...))).)))))....((((..(((((..(((((((...)))((.(((....))-)...))))))..)))---))))))...... ( -28.30) >DroYak_CAF1 80547 92 - 1 ACCUUUGGUCUGGAGUUACUUGAGGCGGUGCUGACCAACUUCAGCGCCGUGUUUCACGAGGUAUGUUUA-CAAAUCGGCAGAGAG---GU----AUUGAC (((((...((((.........((.((((((((((......)))))))))).))...(((.(((....))-)...))).)))))))---))----...... ( -31.20) >consensus ACCUUUGGUCUGGAGUUACUUGAGGCCGUGCUGACCAACUUCAGUGCCGUGUUUCACGAGGUAUGUUUA_CAAAUCGGCAUAGAC___GA____AUCGAC (((((.(((((.(((...))).)))))(((((((......)))))))..........)))))...................................... (-19.92 = -19.45 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:28 2006