Locus 2832

Sequence ID 2L_DroMel_CAF1
Location 8,113,708 – 8,113,814
Length 106
Max. P 0.755473
window4502

overview

Window 2

Location 8,113,708 – 8,113,814
Length 106
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.36
Mean single sequence MFE -30.45
Consensus MFE -17.01
Energy contribution -16.33
Covariance contribution -0.69
Combinations/Pair 1.35
Mean z-score -2.21
Structure conservation index 0.56
SVM decision value 0.49
SVM RNA-class probability 0.755473
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8113708 106 - 22407834
UUC---GGUUCGC-------AG-GAAUCU-CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUAUCUAUCGGAAGCUGGCUCCUUCCCAGAGCCGGAAUUCAUACA
...---(((..(.-------((-((..((-(((((.....)))))).)..))))).))).......................(((..(((((((.......)))))))..)))..... ( -33.30)
>DroPse_CAF1 127998 96 - 1
UUG---GUUUUUCGGGUGGAAGAGAACCUGCAGCCUGGCUGGCUGGGGAUUCCCC------------AUU--AACAUCUGUCUGAAACUUA-----UCCUAGAAUUGGAAUUCCUACA
..(---(..(((((((..((..........(((((.....)))))(((....)))------------...--....))..)))))))....-----(((.......)))...)).... ( -26.90)
>DroSec_CAF1 69646 106 - 1
UUC---GAUUCGC-------AG-GAAUCU-CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUAUCUAUCGGAAGCUAGCUCCUUCCCAGAGCCGGAAUUCAUACA
...---(((((((-------((-((..((-(((((.....)))))).)..))))...............((((.........))))))..((((.......))))..)))))...... ( -27.00)
>DroSim_CAF1 69744 106 - 1
UUC---GGUUCGC-------AG-GAAUCU-CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUAUCUAUCGGAAGCUAGCUCCUUCCCAGAGCCGGAAUUCAUACA
(((---((((((.-------((-((..((-(((((.....)))))).)..)))).)..........................(((((.......)))))..))))))))......... ( -33.10)
>DroEre_CAF1 70333 105 - 1
UUC---GGUUCGC-------AG-GAAUCU-CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUUCUCAUCUCCAUU-CGAUCGGAAGCUUGCUCCUUCCCAGAGCCGGAAUUCAUACA
(((---((((((.-------((-((..((-(((((.....)))))).)..)))).)....................-.....(((((.......)))))..))))))))......... ( -33.10)
>DroYak_CAF1 71541 109 - 1
UUCACAGGUUCGC-------AG-GAAUCU-CAGCCUGGCUGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUACCGAUCGGAAGCUAGCUCCUUUCCAGAGCCGAAAUUCAUACA
......((((((.-------((-((..((-(((((.....)))))).)..)))).)..........................(((((........))))).)))))............ ( -29.30)
>consensus
UUC___GGUUCGC_______AG_GAAUCU_CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUAUCUAUCGGAAGCUAGCUCCUUCCCAGAGCCGGAAUUCAUACA
......(((((............)))))..(((((.....)))))..(((((................(((((.........)))))..............)))))............ (-17.01 = -16.33 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:23 2006