| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,061,404 – 8,061,519 |
| Length | 115 |
| Max. P | 0.517140 |
| Location | 8,061,404 – 8,061,519 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.20 |
| Mean single sequence MFE | -33.32 |
| Consensus MFE | -21.83 |
| Energy contribution | -21.48 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8061404 115 - 22407834 -----AUUAUAGAAUUGCUGUGCUGGAGAGCAUUAUCCAACAUCUAGGAACAUUCGACUUGUGCAAUGGCCUGCAGGCAAUCCCACUGAUCCAGGUUAUACUCAUGUUGACUACCGAUCU -----....((((.(((..(((((....)))))....)))..))))((.....(((((.((.(..(((((((((((.........)))...)))))))).).)).)))))...))..... ( -23.40) >DroVir_CAF1 18564 120 - 1 CAAACCCAACAGAAUCGCUGUGCUGGAGAGCAUCAUCGAGCAUCUGGGCACGUUCGAUCUGUGCAAUGGCCUGCAGGCUAUUCCGCUCAUUCAGGUCAUCUUGAUGCUGACCACGGAUCU ....((((((((.....))))(((.((........)).)))...)))).......((((((((((((((((....)))))))..)).......(((((.(.....).)))))))))))). ( -39.50) >DroGri_CAF1 20262 120 - 1 CACCAUUUGCAGAAUUGCCGUGCUGGAGAGCAUCAUUGCGCAUCUGGACACAUUUGAUCUGUGCAACGGCUUGCAAGCUAUACCCCUGAUUCAGGUCAUACUAAUGCUGACCACCGAUCU .....(((((((....(((((.(..((..(((....)))...))..).((((.......))))..))))))))))))..........((((..(((((.........)))))...)))). ( -29.80) >DroMoj_CAF1 18352 117 - 1 UA---UUAUCAGGAUUGCUGUGCUGGAGAGCAUCAUCGAGCACUUGAGCACAUUCGAUAUGUGCAAUGGCCUGCAGGCCAUACCGCUUAUUCAGGUGAUUUUGAUGCUGACCACAGACUU ..---............((((...((..(((((((.....(((((((((((((.....)))))).((((((....)))))).........)))))))....)))))))..)))))).... ( -42.40) >DroAna_CAF1 19741 115 - 1 -----CUUUUAGACUUGCUGUGCUGGAAAGUAUCAUCAAUCACCUGAGCACCUUCGACCUGUGCAACGGCCUCCAGGCUAUACCACUCAUCCAGGUGAUCCUUAUGCUGACCACAGACCU -----............(((((......(((((.....((((((((.((((.........))))...((((....))))............))))))))....)))))...))))).... ( -30.20) >DroPer_CAF1 86299 115 - 1 -----AUUGCAGGAUUGCUGUUUUGGAGAGCAUUAUCCAGCACUUGGGCACAUUCGAUCUGUGCAAUGGUCUGCAGGCCAUACCGCUCAUCCAGGUGAUACACAUGCUGACCACAGAUCU -----......((((..((((...((..(((((.......((((((((((((.......))))).((((((....)))))).........)))))))......)))))..)))))))))) ( -34.62) >consensus _____AUUACAGAAUUGCUGUGCUGGAGAGCAUCAUCGAGCACCUGGGCACAUUCGAUCUGUGCAAUGGCCUGCAGGCUAUACCGCUCAUCCAGGUGAUACUCAUGCUGACCACAGAUCU ........((((.....))))..(((..(((((........(((((((((((.......))))).((((((....)))))).........)))))).......)))))..)))....... (-21.83 = -21.48 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:11 2006