Locus 2824

Sequence ID 2L_DroMel_CAF1
Location 8,060,427 – 8,060,533
Length 106
Max. P 0.787721
window4489

overview

Window 9

Location 8,060,427 – 8,060,533
Length 106
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 77.30
Mean single sequence MFE -30.49
Consensus MFE -20.20
Energy contribution -21.31
Covariance contribution 1.11
Combinations/Pair 1.18
Mean z-score -1.45
Structure conservation index 0.66
SVM decision value 0.58
SVM RNA-class probability 0.787721
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8060427 106 + 22407834
GUACGUAGGUGUUCCGUCAACUCUACCAGUGCAUCGUAUGAAAGCAUAGGAGGAUUAGCGUUGUAAGGAGCACCAGUCUGAAUGCA-AAAAUUAAAGAAUAUUAAUA
.......((((((((..((((.(((...((.(.((.((((....)))).))).))))).))))...))))))))............-.................... ( -26.50)
>DroVir_CAF1 17572 104 + 1
GUGCGCAAAUGCUCCGUCAGCUCCACCAGCGCAUCGUAGCUGAGCAGCGGCGGAUUGGCAUUAUAAGGAGCGCCGUUCUGCAGGAA--CAAUAAUAUACUAUUAAA-
((((.(.(((((((((((.(((.(..((((........)))).).)))))))))...))))).....).)))).((((.....)))--).................- ( -29.20)
>DroSim_CAF1 16373 106 + 1
GUACGUAGGUGUUCCGUCAACUCUACCAGUGCAUCGUACGAAAGCAUAGGAGGAUUGGCGUUGUAAGGAGCACCAGUCUGAAUGCA-AAAAUAAUAGAAUAUUAAUA
.......((((((((..((((....(((((.(.((.(((....)..)).))).))))).))))...))))))))............-.................... ( -27.40)
>DroEre_CAF1 16801 107 + 1
GUACGUAGGUGUUCCGUCAGCUCCACCAGUGCAUCGUAGGAAAGCAUUGGCGGAUUGGCGUUAUAGGGAGCACCAGUCUGAUUGUAAAAAAUAAAAGACCUUUAAUA
.......(((((((((((((.(((.(((((((.((....))..))))))).)))))))).......)))))))).((((.(((......)))...))))........ ( -36.01)
>DroYak_CAF1 17376 101 + 1
GUGCGUAGGUGUUCCGUCAGCUCCACCAGUGCAUCGUAAGAAAGCAUUGGGGGAUUGGCGUUGUAGGGAGCACCAGUCUG------AAAAAUAAACGACCAUUAAUG
.......(((((((((((((..((.(((((((.((....))..)))))))))..))))).......)))))))).(((..------..........)))........ ( -35.11)
>DroAna_CAF1 18761 106 + 1
GUGCGCAGGUGCUCGGUGAGCUCAACCAGUGCGUCGUAGCUCAACAGCGGAGGAUUGGCGUUGUACGGAGCUCCCGUCUAAAGAGA-AAAAUGAUCCACAUUUAGUU
(((.((....)).(((.((((((..(((((.(..(((.(.....).)))..).)))))((.....)))))))))))..........-.........)))........ ( -28.70)
>consensus
GUACGUAGGUGUUCCGUCAGCUCCACCAGUGCAUCGUAGGAAAGCAUAGGAGGAUUGGCGUUGUAAGGAGCACCAGUCUGAAUGCA_AAAAUAAAAGACUAUUAAUA
.......(((((((((((((.(((.((.((((...........)))).)).)))))))).......))))))))................................. (-20.20 = -21.31 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:10 2006