Locus 2820

Sequence ID 2L_DroMel_CAF1
Location 8,046,911 – 8,047,031
Length 120
Max. P 0.603340
window4484

overview

Window 4

Location 8,046,911 – 8,047,031
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.72
Mean single sequence MFE -37.25
Consensus MFE -16.02
Energy contribution -15.17
Covariance contribution -0.86
Combinations/Pair 1.42
Mean z-score -2.00
Structure conservation index 0.43
SVM decision value 0.14
SVM RNA-class probability 0.603340
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8046911 120 + 22407834
ACGCCUUCACAUUCGAGUAUUUGGAACCAUACUACUCUGGCAAGUGUACUCAGUACUCCAACUGUCUGCACUGCCUCACUGACGCCUCCUGUGCUUGGUGUCCUCUCACCAAUAUCUGCC
..((...((((...(((((..((....))...))))).((((.(((((..((((......))))..)))))))))..............)))).((((((......)))))).....)). ( -32.80)
>DroVir_CAF1 3046 120 + 1
AUGCGUUUACGUUCGAGUAUCUGGAGCCGUAUUAUUCGGGCGAUUGUACACAGUAUAGCAACUGUCUGCACUGCCUGACAGAUGGCUCCUGUUCGUGGUGUCCGCUGACCAGCAAAUGUC
..(((..(((...((((.....((((((((.....(((((((..((((.(((((......))))).)))).)))))))...))))))))..))))..)))..)))............... ( -42.10)
>DroGri_CAF1 3586 120 + 1
AUGCACUGACUUUUGAGUAUUUGGAGCCGUAUUACUCGGGGAUGUGCAGCCAGUACAGCAACUGUUUGCACUGCUUGACUGAUGCUUCCUGCUCCUGGUGCCCCUUGACCAACAAAUGUC
.......(((.((((.......(((((.((((((.(((((.(.((((((.((((......)))).))))))).))))).)))))).....)))))((((........)))).)))).))) ( -37.60)
>DroWil_CAF1 3944 120 + 1
AUGCUUUCACUUUUGAAUAUUUGGAACCAUAUUAUUCUGGUGAUUGUACACAAUAUUCCAAUUGUUUGUAUUGCCUAACAGAUGCCUCCUGUUCGUGGUGUCCAUUGACAGCGAAAUGUC
.(((..(((((...(((((..((....))...))))).)))))..))).(((((......)))))..(((((........))))).(((((((.((((...)))).))))).))...... ( -25.90)
>DroMoj_CAF1 3103 120 + 1
AUGCAUUUACCUUCGAGUACUUGGAGCCGUACUAUUCCGGCGAUUGCACUCAAUAUAACAAUUGUCUGCAUUGCCUGACCGAUGGCUCCUGCUCGUGGUGUCCACUGACCAGCAAAUGUC
.(((....(((..((((((...((((((((.....((.((((((.(((..((((......))))..))))))))).))...)))))))))))))).)))(((....)))..)))...... ( -43.80)
>DroAna_CAF1 5254 120 + 1
ACGCCUUUACAUUCGAGUACUUGGAACCGUACUACUCCGGGGACUGCACCAAGUACGGCAACUGCUUGCACUGCCUGACGGACGCCUCCUGUGCCUGGUGCCCCCUGACGAGCCGGUGCC
.((((..........(((((........))))).((((((((...((((((.((((((((..((....)).))))....(((....))).)))).)))))).)))))..)))..)))).. ( -41.30)
>consensus
AUGCAUUUACAUUCGAGUAUUUGGAACCGUACUACUCCGGCGAUUGCACACAGUACAGCAACUGUCUGCACUGCCUGACAGAUGCCUCCUGUUCGUGGUGUCCACUGACCAGCAAAUGUC
..............(((((..((....))...))))).(((...((((..((((......))))..))))..))).....((((((..........)))))).................. (-16.02 = -15.17 +  -0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:04 2006