Locus 282

Sequence ID 2L_DroMel_CAF1
Location 808,158 – 808,262
Length 104
Max. P 0.599612
window449

overview

Window 9

Location 808,158 – 808,262
Length 104
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.60
Mean single sequence MFE -26.52
Consensus MFE -16.11
Energy contribution -15.18
Covariance contribution -0.94
Combinations/Pair 1.33
Mean z-score -1.68
Structure conservation index 0.61
SVM decision value 0.13
SVM RNA-class probability 0.599612
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 808158 104 + 22407834
CG----ACAGCUUGUUAGUUCAGAAACUAUUAAAAGUCGCUUAACUCAGGCAAAUUCUGCAC------------AAUUGAUCUACAUAUGUGUGUCAAGCACACGUAGGCGACCUCCACU
..----.....(((.(((((....))))).)))..((((((........(((.....)))..------------............((((((((.....))))))))))))))....... ( -22.50)
>DroSec_CAF1 68403 104 + 1
CG----GCAGCUUGUUAGUUCAGAAACUAUUAAAAGUCGCCUAACUCAGGCAAGUUCUGCAC------------AAUUGAUCUACAUAUGUGUACGAAGCACACGUAGGCGACCUCCACU
.(----(.((.(((.(((((....))))).)))..((((((((......((...((((((((------------(..((.....))..)))))).))))).....))))))))))))... ( -26.40)
>DroSim_CAF1 73299 104 + 1
CG----GCAGCUUGUUAGUUCAAAAACUAUUAAAAGUCGCCUAACUCAGGCAAAUUCUGCAC------------AAUUGAUCUACAUAUGUGUACGAAGCACACGUAGGCGACCUCCACU
.(----(.((.(((.(((((....))))).)))..((((((((......((...((((((((------------(..((.....))..)))))).))))).....))))))))))))... ( -26.40)
>DroYak_CAF1 72711 111 + 1
GCGAAUUCGC-CUGUUGGUUCAAAAACUAUAACAAGUCGUUUAACCAAGGCAUAUUCUGUACAAGCAGCUGCAGAACUGA--------UGUAUACCAGGCAUACGCAUGUGGCCUCCACU
(((.((..((-(((((((((.((..(((......)))..)).)))))).((((.(((((((........)))))))...)--------)))....))))))).)))..((((...)))). ( -30.80)
>consensus
CG____GCAGCUUGUUAGUUCAAAAACUAUUAAAAGUCGCCUAACUCAGGCAAAUUCUGCAC____________AAUUGAUCUACAUAUGUGUACCAAGCACACGUAGGCGACCUCCACU
...............(((((....)))))......(((((((.......(((.....)))...........................((((((.......)))))))))))))....... (-16.11 = -15.18 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:58 2006