Locus 2819

Sequence ID 2L_DroMel_CAF1
Location 8,045,270 – 8,045,387
Length 117
Max. P 0.877807
window4483

overview

Window 3

Location 8,045,270 – 8,045,387
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 77.66
Mean single sequence MFE -36.59
Consensus MFE -19.13
Energy contribution -18.88
Covariance contribution -0.25
Combinations/Pair 1.29
Mean z-score -2.19
Structure conservation index 0.52
SVM decision value 0.90
SVM RNA-class probability 0.877807
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8045270 117 + 22407834
AGUACAAUAAUACGGAAAGUGGUGGCAAAUGGAAGCAAAUGGCCAUUAGGUCCGCAGUGAAGCCGCCUGCUUUGGCCAGGCAUACGCUUAACACCGCUGGAUCGUAUCUCUAUAUAU
.........((((((..(((((((..((.((...((...((((((.(((((..((......)).)))))...)))))).))...)).))..)))))))...)))))).......... ( -37.10)
>DroPse_CAF1 47339 117 + 1
AGUACAAUAAUACGGAAAGUGGUGGCAAGUGGAAACAAAUGGCCAUCAGGUCGAAGAUAAAGCCCCCGGCGGUGGCCAGGCACACACUAAACACAGCCCGGGAUCACUUGUAUAUGU
.((((((.....(((....(((((((...((....))....)))))))..)))..........(((.(((.(((...((.......))...))).))).))).....)))))).... ( -35.90)
>DroGri_CAF1 1687 117 + 1
AAUACAAUAACACUGAAAGUGGCGGCAAAUGGAAACAGAUGGCCAUCAAAUCAAAACUUCAACCACCGGCGCUGGCCCGCCACACGCUGACAACGGCUGCGGAUUAUCUGUAUUUGU
((((((((((..(((...((((((((...((....))....))).......................(((....))).)))))..((((....))))..))).)))).))))))... ( -32.30)
>DroYak_CAF1 2261 117 + 1
AGUACAAUAACACGGAAAGUGGUGGCAAAUGGAAGCAAAUGGCCGUCAGGUCGGCAGUGAAGCCACCUGCUUUGGCCAGGCAUACGCUUAACACCGCUGGAUCGUAUCUGUACAUUU
.(((((.....((((..(((((((..((.((...((...((((((.(((((.(((......))))))))...)))))).))...)).))..)))))))...))))...))))).... ( -45.50)
>DroMoj_CAF1 1348 117 + 1
AAUACAAUAAUACGGAAAGUGGCGGCAAAUGGAAGCAAAUGGCUGUCAGAUCAAAGCUACAGCCUCCGGCACUUGCAAGGCAUACUUUAACCACCGCCUUGGAUUAUUUGUAUCUGU
.((((((((((.....(((((.(((....((....))...((((((.((.......)))))))).))).))))).((((((..............)))))).)))).)))))).... ( -32.84)
>DroPer_CAF1 68046 117 + 1
AGUACAAUAAUACGGAAAGUGGUGGCAAGUGGAAACAAAUGGCCAUCAGGUCGAAGAUAAAGCCCCCGGCGGUGGCCAGGCACACACUAAACACAGCCCGGGAUCACUUGUAUAUGU
.((((((.....(((....(((((((...((....))....)))))))..)))..........(((.(((.(((...((.......))...))).))).))).....)))))).... ( -35.90)
>consensus
AGUACAAUAAUACGGAAAGUGGUGGCAAAUGGAAACAAAUGGCCAUCAGGUCGAAAAUAAAGCCACCGGCGCUGGCCAGGCACACGCUAAACACCGCCGGGGAUUAUCUGUAUAUGU
.(((((........((...(((((((...((....))....)))))))..)).........(((....((....))..)))...........................))))).... (-19.13 = -18.88 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:03 2006