| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,042,540 – 8,042,633 |
| Length | 93 |
| Max. P | 0.613847 |
| Location | 8,042,540 – 8,042,633 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.41 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -18.53 |
| Energy contribution | -18.83 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8042540 93 + 22407834 ACUGCGUCACCUUGUGCAGCUUGUGGACCUUGCACUUCUUGCAGAAGGUGCGGCGUUGUUUCGGUACGUUCACCUG-GAAAAC-ACA-----CAA-----A-----UCCC ...((..((((((.(((((...(((.......)))...))))).))))))..))(((.(((((((......))).)-))))))-...-----...-----.-----.... ( -25.50) >DroVir_CAF1 1463 98 + 1 ACUGCGUUACCUUGUGCAGCUUGUGCACCUUGCACUUUUUGCAGAAGGUGCGACGUUGUUUCGGUACAUUCACCUA-UAAUACCACA------AG-----AGACGUAUUG ..((((((..((((((((((...(((((((((((.....))))..)))))))..))))....(((......)))..-......))))------))-----.))))))... ( -31.00) >DroGri_CAF1 1573 99 + 1 ACUGGGUCACCUUGUGCAGCUUGUGAACCUUGCACUUCUUGCAGAAAGUGCGACGUUGUUUUGGUACAUUCACCUG-UAAAAAUAAAUUGCACAA-----A-----UCAC ...((....))((((((((.((((.(((.(((((((((.....).)))))))).))).....(((......)))..-.....)))).))))))))-----.-----.... ( -24.90) >DroWil_CAF1 1630 93 + 1 ACUGCGUCACUUUGUGCAGCUUGUGGACCUUGCACUUUUUGCAGAAAGUGCGACGUUGUUUCGGUACAUUCACCUA-AAAAAG-AAA-----UUG-----A-----AAGU ((.((((((((((.(((((...(((.......)))...))))).)))))..))))).))...(((......)))..-......-...-----...-----.-----.... ( -21.30) >DroAna_CAF1 1443 99 + 1 ACUGCGUUACCUUGUGCAGCUUGUGGACCUUGCACUUCUUGCAGAAAGUGCGACGUUGUUUUGGUACGUUCACCUAUGAAAUG-ACA-----CAAUAAACA-----AACA .(((((........))))).((((((((.(((((((((.....).)))))))).))).....(((......))).........-.))-----)))......-----.... ( -22.10) >DroMoj_CAF1 1267 93 + 1 ACUGCGUCACCUUGUGCAGCUUAUGGACCUUGCACUUUUUGCAAAAGGUGCGACGUUGCUUAGGUACAUUCACCUA-UAAGAAUCAA------AC-----A-----AUAC .(((((.(.....))))))((((..(((.((((((((((....)))))))))).)))...(((((......)))))-))))......------..-----.-----.... ( -22.90) >consensus ACUGCGUCACCUUGUGCAGCUUGUGGACCUUGCACUUCUUGCAGAAAGUGCGACGUUGUUUCGGUACAUUCACCUA_UAAAAA_AAA_____CAA_____A_____AAAC ((.((((((((((.(((((...(((.......)))...))))).)))))..))))).))...(((......))).................................... (-18.53 = -18.83 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:58 2006