Locus 2812

Sequence ID 2L_DroMel_CAF1
Location 8,009,969 – 8,010,085
Length 116
Max. P 0.644346
window4470

overview

Window 0

Location 8,009,969 – 8,010,085
Length 116
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 81.49
Mean single sequence MFE -30.73
Consensus MFE -18.61
Energy contribution -19.81
Covariance contribution 1.20
Combinations/Pair 1.27
Mean z-score -1.98
Structure conservation index 0.61
SVM decision value 0.23
SVM RNA-class probability 0.644346
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8009969 116 + 22407834
AAAACCCCUUAUCAUAGUUAUAGAAUCAGCUGAACGAUAAGCCCAAUGUUUGUCGACCAAUUCGGCAUGAUUUGAUGUGAUAUAAGCCACUUUGCAAGAGGUACUCAAACUAAAGG
...(((.(((((((((......((((((((((((((((((((.....)))))))).....)))))).))))))..))))))....((......))))).))).............. ( -28.40)
>DroSec_CAF1 5584 116 + 1
AAAUCCCCUUAUCAUAGUCAUAGAAUCAGCUGAUCGAUAAGCCCAAUGUCUGUCGACCAAUUCGGCAUGAUUCGAUGUGAGAUAAGCAACUUUGCAGGAGGUGCUUAAACUAAAGG
......((((.(((((......(((((((((((((((((..(.....)..)))))).....))))).))))))..)))))..((((((.(((.....))).)))))).....)))) ( -32.40)
>DroSim_CAF1 5548 116 + 1
AAAUCCCCUUAUCAAAGUCAUAGAAUCAGCUGAUCGAUAAGCCCAAUGUUUGUCGACCAAAUCGGCAUGAUUCGAUGUGAGAUAAGCAACUUUGCAGGAGGUACUUACACUAAAGG
....(((((((((....(((((((((((((((((((((((((.....))))))))).....))))).))))))..))))))))))(((....))).)).))............... ( -31.60)
>DroEre_CAF1 6106 116 + 1
AAAUCCCCUUAUCAAACUCAAAGAAUCAGCUGAUCGAUAAGCCCAGUGUCUGUCGACCAAGUCGGCAUGAUUCGGGGUCAGAUAAGCAACUUUGCAAGUGUCACUUAAGCUAAAGA
.......((((((..((((...(((((((((((((((((..(.....)..)))))).....))))).)))))).))))..))))))...(((((((((.....)))..)).)))). ( -32.90)
>DroYak_CAF1 7500 115 + 1
AAAACCACUUAUCAAAGUCAUAGAAUCAGCUGAGCGAUAAGCCCAGUGCUUGUCGACCAACUCGGCAUGUUUGGGAGUGAGAUAAGCAACUUUGCAAGAGGUAUUUACACUAAAU-
...(((..(((((..(.((...((((..((((((((((((((.....)))))))).....))))))..))))..)).)..)))))(((....)))....))).............- ( -30.00)
>DroAna_CAF1 5617 116 + 1
UAGUCCUCUUAUCAAAGUCAAAGAAUCGGCGGAGCGAUAAGCCCAGUGCUGAUCUAUCAAGUCGGCAUGUUCUUCGCCAAGAUAAUCAACUUUAUGAGAUGGGUUUACACUAAGAG
.(..((((((((.(((((......((((((((.((.....)))).((((((((.......)))))))).......)))..))).....))))))))))).))..)........... ( -29.10)
>consensus
AAAUCCCCUUAUCAAAGUCAUAGAAUCAGCUGAUCGAUAAGCCCAAUGUUUGUCGACCAAGUCGGCAUGAUUCGAUGUGAGAUAAGCAACUUUGCAAGAGGUACUUAAACUAAAGG
.......((((((.........((((((((((((((((((((.....)))))))).....)))))).)))))).......)))))).............................. (-18.61 = -19.81 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:51 2006