Locus 281

Sequence ID 2L_DroMel_CAF1
Location 807,960 – 808,054
Length 94
Max. P 0.861759
window448

overview

Window 8

Location 807,960 – 808,054
Length 94
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -30.69
Consensus MFE -23.31
Energy contribution -23.15
Covariance contribution -0.16
Combinations/Pair 1.30
Mean z-score -1.86
Structure conservation index 0.76
SVM decision value 0.83
SVM RNA-class probability 0.861759
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 807960 94 + 22407834
---------GUGUUAAUCCGCAA--------AAUCGGUAGGACUACGGCUGCCAUAUCCAGAUAUGUGCAGAUAC----AUAUACACAGCCUUGUAUAUGGCGGCAGCUGUGGUU
---------........(((...--------...)))...(((((((((((((........(((((((....)))----)))).....(((........)))))))))))))))) ( -34.30)
>DroSec_CAF1 68205 94 + 1
---------GUGUUAAUCCGCAA--------AAUCGGUAGGACUACGGCUGCCAUAUCCAGAUAUGUGCAGAUAC----AUAUACUCAGCCUUGUAUAUGGCGGUAGCUGUGGAU
---------.......(((((..--------.....)).)))(((((((((((.......((((((((......)----))))).)).(((........)))))))))))))).. ( -30.90)
>DroSim_CAF1 73101 94 + 1
---------GUGUUAAUCCGCAA--------AAUCGGUAGGACUACGGCUGCCAUAUCCAGAUAUGUGCAGAUAC----AUAUACACAGCCUUGUAUAUGGCGGUAGCUGUGGUU
---------........(((...--------...)))...(((((((((((((........(((((((....)))----)))).....(((........)))))))))))))))) ( -32.30)
>DroEre_CAF1 71278 115 + 1
GCGUGUGCAGUGUUAAUCCGCAAAAUCGCAAAAUCGGUAGGACUGCGGCUGCCAAAUCCAGAUAUGUGCAGAUAUACAGAUACAUACGGCCUUAUAUAUGGCCAUAGCUGUGGUU
(((..(((.(.......).)))....)))...........(((..((((((...........(((((((.........).)))))).((((........)))).))))))..))) ( -30.00)
>DroYak_CAF1 72491 99 + 1
GCGUGUGCAGUGUUAAUCCGCAA--------AAUCGGUAGAACUGCGGCUGCCAUAUCCAGAUACGUACA--------GAUAUAUACGGCCGAGUAUAUGGCUAUAGCUGUGGUU
(((..(.........)..)))..--------.........(((..((((((((((((.......((((..--------......)))).......)))))))...)))))..))) ( -25.94)
>consensus
_________GUGUUAAUCCGCAA________AAUCGGUAGGACUACGGCUGCCAUAUCCAGAUAUGUGCAGAUAC____AUAUACACAGCCUUGUAUAUGGCGGUAGCUGUGGUU
.........(((......)))...................(((((((((((((...........((((................))))(((........)))))))))))))))) (-23.31 = -23.15 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:57 2006