| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,990,596 – 7,990,687 |
| Length | 91 |
| Max. P | 0.540726 |
| Location | 7,990,596 – 7,990,687 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 79.37 |
| Mean single sequence MFE | -13.82 |
| Consensus MFE | -3.48 |
| Energy contribution | -3.92 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7990596 91 + 22407834 CUUACUAUUUUUAGUUGCCACUGCCAAUAGGAAUCACGAUCGAAACUUUCGUGAGUCAAA-AAAACACCUGGCUAACCAAA--AUAUUAUCAAU .....((((((..(((((((..........((.((((((.........)))))).))...-........)))).))).)))--)))........ ( -15.70) >DroSec_CAF1 1354 92 + 1 CUUACUAUUUUUAGUAGCCACUGCCAACAGGAAUCGCGAUCGAAACUUUCAUGAGUCAAAAAAAACACCUGGCUAACCAAA--AUAUUAUCAAU .....((((((...(((((((((....)))((.(((.((.........)).))).))............))))))...)))--)))........ ( -14.40) >DroSim_CAF1 1204 79 + 1 CUUACUAUUUUUAGUAGCCACUGCCAACAG------------AAACUUUCAUGAGUCAAA-AAAACACCUGGCUAACCAAA--AUAUUAUCAAU .....((((((...(((((((((....)))------------..((((....))))....-........))))))...)))--)))........ ( -12.70) >DroEre_CAF1 1330 89 + 1 CUUACUAUUAUUAGUAA-CCACGCAAAUAAGAAUGAGGAUCGAAAAUUGCAUGAUUCACA--UAACACCUGGCUAACCAAA--ACAUUAUCAAU .((((((....))))))-....((........(((.((((((.........)))))).))--)........))........--........... ( -9.59) >DroYak_CAF1 1394 92 + 1 CUAACUAUUAAUAGUAGGCCCUACCAACUGGAAUCUUGAUCAACAUUUUGGUGAGUCAAA--UAACACCUGGCUAACCAAAAAAUAUUAUCAAU ...........((((.((.....)).)))).....(((((.....(((((((.(((((..--.......))))).)))))))......))))). ( -16.70) >consensus CUUACUAUUUUUAGUAGCCACUGCCAACAGGAAUCACGAUCGAAACUUUCAUGAGUCAAA_AAAACACCUGGCUAACCAAA__AUAUUAUCAAU .((((((....))))))....................................(((((...........))))).................... ( -3.48 = -3.92 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:41 2006