Locus 2801

Sequence ID 2L_DroMel_CAF1
Location 7,954,025 – 7,954,128
Length 103
Max. P 0.959545
window4449

overview

Window 9

Location 7,954,025 – 7,954,128
Length 103
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 77.67
Mean single sequence MFE -36.92
Consensus MFE -25.11
Energy contribution -25.91
Covariance contribution 0.80
Combinations/Pair 1.12
Mean z-score -2.08
Structure conservation index 0.68
SVM decision value 1.50
SVM RNA-class probability 0.959545
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7954025 103 - 22407834
AUCCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGCUG----UCAGCA-AGCGAUCCGAUCACUUGGGAACCCAACGAGAAGGGGUUUGGGCGGUGAUUGGUUUGUGAGA
.....((.(((.((((((..(......)..))))))----))))).-.((((.(((((((((...((((((.........))))))....))))))))).)))).... ( -37.10)
>DroSec_CAF1 125481 96 - 1
AUCCGGCGUGAUCAGCUCGUGGGCAGUUGUGAGCUGUCUGUCAGCA-AGCGAUCCGAUCAC----------AGCUAGAAGGGGUUUGGCAGGUGAUUGGA-UGGGAGA
.(((((((.((.(((((((..(....)..)))))))))))))....-....((((((((((----------.((((((.....))))))..)))))))))-).))).. ( -40.00)
>DroSim_CAF1 125532 97 - 1
AUCCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGCUGUCUGUCAGCA-AGCGAUCCGAUCAC----------AGCGAGAAGGGGUUUGGCAGGUGAUUGGGUUGCGAGA
....((((.((.((((((..(......)..))))))))))))....-.(((((((((((((----------.((.(((.....))).))..))))))))))))).... ( -38.90)
>DroEre_CAF1 127187 99 - 1
AUGCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGUUG----UCAGCAAAGCGAUCCGAUCACAGGGGGAUCCAC-G---AGGGGGGUGG-GGGUGAUAGGGUGGCGAGA
.....((.(((.((((((..(......)..))))))----)))))...((.((((.(((((.......(((((-.---......))))-).))))).)))).)).... ( -32.40)
>DroYak_CAF1 130397 94 - 1
AUCCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGCUG----UCAGCAAAGCGAUCCGAUCACUUG-GGACCCAC-G---GAAGA----G-GGGUGUUUGGGUUGCAAGA
.....((.(((.((((((..(......)..))))))----)))))...(((((((((.(((...-...(((.(-.---...).----)-))))).))))))))).... ( -36.20)
>consensus
AUCCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGCUG____UCAGCA_AGCGAUCCGAUCAC__G_G_A_CCACCGAGAAGGGGUUUGG_AGGUGAUUGGGUUGCGAGA
.....((.(((.((((((..(......)..))))))....)))))...(((((((((((((..............................))))))))))))).... (-25.11 = -25.91 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:31 2006