Locus 280

Sequence ID 2L_DroMel_CAF1
Location 807,767 – 807,859
Length 92
Max. P 0.763745
window447

overview

Window 7

Location 807,767 – 807,859
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 83.97
Mean single sequence MFE -27.00
Consensus MFE -22.83
Energy contribution -22.17
Covariance contribution -0.66
Combinations/Pair 1.09
Mean z-score -1.74
Structure conservation index 0.85
SVM decision value 0.51
SVM RNA-class probability 0.763745
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 807767 92 - 22407834
UCAUCUUCCAUGGAAUGCGAUUCGCAAACCUUUUGUUUGCCUAAGCUCUCGGUGGGAGAGGGGGGGGGGUUGAUUUCCUUUUCGGGAAUGGG
...((((((((.((..((.....((((((.....))))))....))..)).))))))))(..((((..(....)..))))..)......... ( -32.90)
>DroSec_CAF1 68026 78 - 1
CCAUCUUCCAUGGAAUGCGAUUCACAAACCUUUUGUUUGCCUAAGCUCUCGGUGGGAG--------------CUCUCCUUUUUGGGGAAGGG
((..(((((((.((..((......(((((.....))))).....))..)).)))))))--------------.(((((.....))))).)). ( -25.30)
>DroSim_CAF1 72922 78 - 1
UCAUCUUCCAUGGAAUGCGAUUCACAAACCUUUUGUUUGCCUAAGCUCUCGGUGGGAG--------------CUCUCCUUUUCGGGGAAGGG
....(((((((.((..((......(((((.....))))).....))..)).)))))))--------------.(((((.....))))).... ( -22.80)
>consensus
UCAUCUUCCAUGGAAUGCGAUUCACAAACCUUUUGUUUGCCUAAGCUCUCGGUGGGAG______________CUCUCCUUUUCGGGGAAGGG
((..(((((((.((..((......(((((.....))))).....))..)).)))))))...............(((((.....))))).)). (-22.83 = -22.17 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:56 2006