Locus 28

Sequence ID 2L_DroMel_CAF1
Location 107,941 – 108,031
Length 90
Max. P 0.999164
window43

overview

Window 3

Location 107,941 – 108,031
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 94.91
Mean single sequence MFE -19.47
Consensus MFE -19.42
Energy contribution -18.94
Covariance contribution -0.48
Combinations/Pair 1.14
Mean z-score -1.87
Structure conservation index 1.00
SVM decision value 3.41
SVM RNA-class probability 0.999164
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 107941 90 - 22407834
UAUUAUUUUGAGACUUAUUUGGGCGCUCUUUAGGGAAACUUUCCUAGCGUUCUCGGUACUCUCAAAUGAUUUUACUUCUUCAGUAUCU-CC
.(((((((.((((.......(((((((....(((....)))....))))))).......)))))))))))..((((.....))))...-.. ( -20.74)
>DroSec_CAF1 2457 90 - 1
UUUUAUUUUGGGACUUAUUUGGGCGCUCUUUGGGGAAACUUUCCUAGCGUUCUCGGUACUCUCAAAUGAUUUUACUUCUUCAGUAUCU-CC
......(((((((.......(((((((....(((....)))....))))))).......)))))))......((((.....))))...-.. ( -19.54)
>DroSim_CAF1 2458 90 - 1
UUUUAUUUUGGGACUUAUUUGGGCGCUCUUUGGGGAAACUUUCCUAGCGUUCUCGGUACUCUCAAAUGAUUUUACUUCUUCAGUAUCU-CC
......(((((((.......(((((((....(((....)))....))))))).......)))))))......((((.....))))...-.. ( -19.54)
>DroEre_CAF1 2467 90 - 1
UUUUAUUUUGGGACUUAUUUGGGCGCUCUUUGGGGAAACUUUCCUAGCGUUCUCGGCGCUCUCAAAUAAUAUUACUUCUU-AGUAUCUUCC
......(((((((.......(((((((....(((....)))....))))))).......)))))))......((((....-))))...... ( -20.24)
>DroYak_CAF1 2430 89 - 1
UUUUAUUUUGGGGCUUAUUUGGGCGCUCUUUGGGGA-ACUUUCCUAGCGUUCUCGGUACUCUCAAAUAAUUUUACUUCUUCAGUAUCU-CC
..((((((.((((..(....(((((((.....((((-....)))))))))))...)..)))).))))))...((((.....))))...-.. ( -17.30)
>consensus
UUUUAUUUUGGGACUUAUUUGGGCGCUCUUUGGGGAAACUUUCCUAGCGUUCUCGGUACUCUCAAAUGAUUUUACUUCUUCAGUAUCU_CC
......(((((((.......(((((((....(((....)))....))))))).......)))))))......((((.....))))...... (-19.42 = -18.94 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:39 2006