| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,943,270 – 7,943,372 |
| Length | 102 |
| Max. P | 0.763430 |
| Location | 7,943,270 – 7,943,372 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.70 |
| Mean single sequence MFE | -11.87 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.763430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7943270 102 + 22407834 UUUUUCCCAAGACCCCCCCAUCCACCCCCAUAACCAACUUUUGUGAGCGAAAAAUUCUUUGCCAGACUCGUGGCAAUUAUUUUCAAUUUCAUUGCAAUUUUU ............................(((((.......))))).(((((((((...((((((......))))))..)))))........))))....... ( -11.50) >DroEre_CAF1 116474 81 + 1 CCUUUCUCAAGCCCCCC---------------------UUUUGUGAGCCAAAAAUUCUUUGCCAGACUCGUGGCAAUUAUUUUCAAUUUCAUUGCAAUUUUU .................---------------------....(((((...(((((...((((((......))))))..)))))....))))).......... ( -10.30) >DroYak_CAF1 119390 81 + 1 CUUUUCCCAAGCCCCCC---------------------UUUUGUGAGCAGAAAAUUCUUUGCCAGACUCGUGGCAAUUAUUUUCAAUUUCAUUGCAAUUUUU .................---------------------....(((((..((((((...((((((......))))))..))))))...))))).......... ( -13.80) >consensus CUUUUCCCAAGCCCCCC_____________________UUUUGUGAGCAAAAAAUUCUUUGCCAGACUCGUGGCAAUUAUUUUCAAUUUCAUUGCAAUUUUU ..........................................(((((...(((((...((((((......))))))..)))))....))))).......... (-10.30 = -10.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:27 2006