Locus 2797

Sequence ID 2L_DroMel_CAF1
Location 7,935,214 – 7,935,304
Length 90
Max. P 0.774220
window4443

overview

Window 3

Location 7,935,214 – 7,935,304
Length 90
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 79.48
Mean single sequence MFE -17.74
Consensus MFE -11.71
Energy contribution -11.79
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.64
Structure conservation index 0.66
SVM decision value 0.54
SVM RNA-class probability 0.774220
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7935214 90 + 22407834
CGCUGC---UAUUCUCCAUUUCUCACACAUUCUCUGUUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA-----------------
......---......(((.......((((.....(((((((....)))))))...))))........))).......................----------------- ( -12.46)
>DroPse_CAF1 126718 110 + 1
UGUAUUUAGGAUUCUCCAUUUCUCACACAUUCUCUGCUGGUCGCCGGCAGCACUUUGUGCACCACUUUGGUGAACCACACACGCCCACAUACCAGUGCCAGUGCCAGUAC
........((.....)).................((((((.(((.((((((((...)))).......(((....)))..................)))).))))))))). ( -27.90)
>DroSec_CAF1 107130 90 + 1
CGCUGC---UAUUCUCCAUUUCUCACACAUUCUCUGUUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA-----------------
......---......(((.......((((.....(((((((....)))))))...))))........))).......................----------------- ( -12.46)
>DroSim_CAF1 107119 88 + 1
--CUGC---UAUUCUCCAUUUCUCACACAUUCUCUGUUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA-----------------
--....---......(((.......((((.....(((((((....)))))))...))))........))).......................----------------- ( -12.46)
>DroEre_CAF1 108637 90 + 1
CGCUGC---UAUUCUCCAUUUCUCACACAUUCUCUGCUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA-----------------
......---......(((.......((((.....(((((((....)))))))...))))........))).......................----------------- ( -14.86)
>DroPer_CAF1 125747 110 + 1
UGUAUUUAGGAUUCUCCAUUUCUCACACAUUCUCUGCUGGUCGCCGGCAGCACUUUGUGCACCACUUUGGUGAACCACACACGCCCACAUACCAGUGCCAGUACCAGUAC
........((.....)).................(((((((.((.((((((((...)))).......(((....)))..................)))).))))))))). ( -26.30)
>consensus
CGCUGC___UAUUCUCCAUUUCUCACACAUUCUCUGCUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA_________________
...............(((.......((((.....(((((((....)))))))...))))........)))........................................ (-11.71 = -11.79 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:26 2006