| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,930,748 – 7,930,838 |
| Length | 90 |
| Max. P | 0.750473 |
| Location | 7,930,748 – 7,930,838 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 81.37 |
| Mean single sequence MFE | -18.69 |
| Consensus MFE | -10.18 |
| Energy contribution | -10.54 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7930748 90 + 22407834 UUUCCACC----AUACCCAUUGCUUUUUCGGCCAAAAGGCAAACAAAUUAAAUUUACUGCCGGCAAAACAAUU-UUGCCACGUGUAAAGACUUUC ........----.......(((((((((.....)))))))))..........(((((....((((((.....)-)))))....)))))....... ( -16.50) >DroSec_CAF1 102680 92 + 1 UUCCCACC--ACAUACCACCUAACUUUUCGGCCAAAAGGCAAACAAAUUAAAUUUACUGCCGGCAAAACAAUU-UUGCCACGUGUAAAGACUUUC ........--.............((((.(((((....))).....................((((((.....)-))))).))...))))...... ( -14.70) >DroSim_CAF1 102688 92 + 1 UUCCCACC--ACAUACCACCUAACUUUUCGGCCAAAAGGCAAACAAAUUAAAUUUACUGCCGGCAAAACAAUU-UUGCCACGUGUAAAGACUUUC ........--.............((((.(((((....))).....................((((((.....)-))))).))...))))...... ( -14.70) >DroEre_CAF1 104104 80 + 1 --------------ACCGCCUGACUUUCUGGGCAAAAGGCAAACAAAUUAAAUUUACUGCCGGCAAAACAAUU-UUGCCACGUGUAAAGACUUUC --------------...((((........))))....((((................))))((((((.....)-)))))................ ( -17.39) >DroYak_CAF1 106088 95 + 1 UUCCCACAUUUCCCACCACCUGACUUCUCGGGCGAAAGGCAAACAAAUUAAAUUUACUGCCGGCAAAACAAUUUUUGCCACGUGUAAAGACUUUC ....(((.........(.(((((....))))).)...((((................))))(((((((....)))))))..)))........... ( -20.09) >DroAna_CAF1 101410 90 + 1 CCCCCAGC--U--CAGGACCUAUUUCCCAGGCAGAAAGGCAAACAAAUUUAAUUUACUGCCGGCAAAACAAUU-CUGCCACGUGUAAGGUCCUGA ........--(--((((((((........(((((((.((((................))))(......)..))-))))).......))))))))) ( -28.75) >consensus UUCCCACC____AUACCACCUAACUUUUCGGCCAAAAGGCAAACAAAUUAAAUUUACUGCCGGCAAAACAAUU_UUGCCACGUGUAAAGACUUUC .......................((((.((.......((((................))))(((((........))))).))...))))...... (-10.18 = -10.54 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:25 2006