| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,922,264 – 7,922,358 |
| Length | 94 |
| Max. P | 0.824109 |
| Location | 7,922,264 – 7,922,358 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 82.82 |
| Mean single sequence MFE | -38.61 |
| Consensus MFE | -26.41 |
| Energy contribution | -27.22 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7922264 94 - 22407834 AGAAGCGCUUGGCUGAACCGGAGGUAAGGUAACAA---------GUUAACUUGCCUCUGCUGCGCAUUUGGGCCCAGUUAAGCC-------GAGCGUUUUGGUUGAGCGC .(((((((((((((.(((((((((((((.(((...---------.))).))))))))))..((.(....).))...))).))))-------))))))))).......... ( -40.60) >DroSec_CAF1 94294 94 - 1 AGAAGCGCUUGGCUGAACCGGAGGUGAGGAAACAA---------GUAGACUUACCUCUGCUGCGCAUUUGGGCCCAGUUAAGCC-------GAGCGUUUUGGUUGAGCGC .(((((((((((((.(((((((((((((.......---------.....))))))))))..((.(....).))...))).))))-------))))))))).......... ( -39.40) >DroSim_CAF1 94264 94 - 1 AGAAGCGCUUGGCUGAACCGGAGGUGAGGAAACAA---------GUAAACUUGCCUCUGCUGCGCAUUUGGGCCCAGUUAAGCC-------GAGCGUUUUGGUUGAGCGC .(((((((((((((.(((((((((..((.......---------.....))..))))))..((.(....).))...))).))))-------))))))))).......... ( -38.80) >DroEre_CAF1 95264 94 - 1 AGAAGCGCUUGGCUGAACCGAAGGUGAGGAAACAA---------GUAAACUUGCCUCUGCUGCGCAUUUGAGCCCAGCUAAGCC-------GAGCGUUUUGGUUGAGCGC ....(((((..((..((.((..(((((((...(((---------(....)))))))).((((.((......)).))))...)))-------...)).))..))..))))) ( -39.20) >DroYak_CAF1 97455 94 - 1 AGAAGCGCUUGGCUGAACCGAAGGUGAGGAAACAA---------GUAAACUUGCCUCUGCUGCGCAUUUGAGUCCAACUAAGCC-------GAGCGUUUUGGUUGAGCGC ....(((((..((..((.((..(((((((...(((---------(....))))))))(((...)))...............)))-------...)).))..))..))))) ( -31.40) >DroAna_CAF1 93827 102 - 1 AGAAGCGCUUGGCUGAGCCACA--------AACAACAGUCAGCCGAAAGCUACCUCCAGGUGCGCUUUAGAGCCGAGCUAAGCCGGAGCCGGAGCGUCUUGGUUGGGCGC ....((((((((((((......--------........))))))))......((.(((((.((((((..(..(((.((...)))))..)..)))))))))))..)))))) ( -42.24) >consensus AGAAGCGCUUGGCUGAACCGGAGGUGAGGAAACAA_________GUAAACUUGCCUCUGCUGCGCAUUUGAGCCCAGCUAAGCC_______GAGCGUUUUGGUUGAGCGC ....(((((..((..((.((.(((((((.....................)))))))..((((.((......)).))))................)).))..))..))))) (-26.41 = -27.22 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:18 2006