| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,916,648 – 7,916,739 |
| Length | 91 |
| Max. P | 0.788235 |
| Location | 7,916,648 – 7,916,739 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 84.81 |
| Mean single sequence MFE | -36.45 |
| Consensus MFE | -26.88 |
| Energy contribution | -28.00 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.788235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7916648 91 - 22407834 AGAGGAAUUGCGGG-----GGGGGGGGGCCUGCAAAUGCGGGGGCGGGGGCGUUCGCAGAGCGGUGGGCGUGGGCCCGCUCAAUAGGCACUGGCCG ...((...(((..(-----..(((.(((((..(...((((((.((....)).))))))..((.....)))..))))).)))..)..)))....)). ( -40.50) >DroSec_CAF1 88654 84 - 1 AGGGGAAUCGAGGG-----GGG-------CUGCAAAUGCGGGGGCGGGGGCGUUCGCAGAGCGGUGGGCGUGGGCCCGCUCAAUAGGCACUGGCCG .........(((.(-----((.-------(..(...((((((.((....)).))))))..((.....)))..).))).)))....(((....))). ( -35.30) >DroSim_CAF1 88555 84 - 1 AGGGGAAUUGAGGG-----GGG-------CUGCAAAUGUGGGGGCGGGGGCGUUCGCAGAGCGGUGGGCGUGGGCCCGCUCAAUAGGCACUGGCCG ......((((((.(-----((.-------(..(...((((((.((....)).))))))..((.....)))..).))).)))))).(((....))). ( -36.00) >DroEre_CAF1 89567 85 - 1 AAGGAGGUUGGGGGGGGGGGGG-------CUCGAAAU----GGGCGGGGGCGUUCGCAGAGCGGUGGGCGUGGGCCCGCUCAAUAGGCACUGACCG .....(((..(..(((......-------)))....(----(((((((.((((((((......))))))))...)))))))).......)..))). ( -34.00) >consensus AGGGGAAUUGAGGG_____GGG_______CUGCAAAUGCGGGGGCGGGGGCGUUCGCAGAGCGGUGGGCGUGGGCCCGCUCAAUAGGCACUGGCCG .............................((((....))))(((((((.((((((((......))))))))...)))))))....(((....))). (-26.88 = -28.00 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:17 2006