Locus 279

Sequence ID	2L_DroMel_CAF1
Location	806,846 – 806,939
Length	93
Max. P	0.724725

overview

Window 6

Location	806,846 – 806,939
Length	93
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	96.57
Mean single sequence MFE	-30.22
Consensus MFE	-27.56
Energy contribution	-28.56
Covariance contribution	1.00
Combinations/Pair	1.00
Mean z-score	-1.28
Structure conservation index	0.91
SVM decision value	0.41
SVM RNA-class probability	0.724725
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 806846 93 - 22407834
GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUGGAU-GGCGGAUGGAU
......((((((((((...........))))).(((((...((((.((((.(((((((....))))....))).))))))))-))))).))))) ( -32.70)
>DroSec_CAF1 67126 93 - 1
GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUGGAU-GGCGGAUGGAU
......((((((((((...........))))).(((((...((((.((((.(((((((....))))....))).))))))))-))))).))))) ( -32.70)
>DroSim_CAF1 72006 93 - 1
GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUGGAU-GGCGGAUGGAU
......((((((((((...........))))).(((((...((((.((((.(((((((....))))....))).))))))))-))))).))))) ( -32.70)
>DroEre_CAF1 70139 94 - 1
GUUCGUGUCCAGCAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGCGCGCAUGGAUAGGCGGAUGGAU
(((((((..((((.(((............)))))))..))...((.(((((..(((((..(((....))))))))..))))).))))))).... ( -26.20)
>DroYak_CAF1 71314 89 - 1
GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUG-----GCGGAUGGAU
......((((((((((...........)))))..........((((((((.(((((((....))))....))).)))))-----).)).))))) ( -26.80)
>consensus
GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUGGAU_GGCGGAUGGAU
......((((((((((...........))))).(((((......((((((.(((((((....))))....))).))))))...))))).))))) (-27.56 = -28.56 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:55 2006