Locus 2784

Sequence ID 2L_DroMel_CAF1
Location 7,888,298 – 7,888,418
Length 120
Max. P 0.994771
window4424

overview

Window 4

Location 7,888,298 – 7,888,418
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.75
Mean single sequence MFE -37.81
Consensus MFE -31.68
Energy contribution -33.12
Covariance contribution 1.44
Combinations/Pair 1.12
Mean z-score -2.36
Structure conservation index 0.84
SVM decision value 2.51
SVM RNA-class probability 0.994771
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7888298 120 + 22407834
UAACUUUCGAUUGUGGCUUCUGCCUGAGUUAGGGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUAUGCAAAUGGAAGCUCAAUAAUUUGGUCUAUGGUCGAAGUA
..((((.((((..(((.((((((((.....((((((.....)))))))))))))).....((((.........((((((.(.(....).).)))))).....)))))))..)))))))). ( -37.24)
>DroSec_CAF1 60928 120 + 1
UAACUUUCGAUUGUGUCUUCUGCUUGAUUUAAGGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUAUGCAAAAGGCAGCUCAAUAAUUUGGUCUAUGGGCGAAGUA
...((((((((.((((((((((((.....(((((((.....)))))))))))))).)).))).))))))))..((((((.(((.....)))))))))..((((.(((....))).)))). ( -40.40)
>DroSim_CAF1 61823 120 + 1
UAACUUUCGAUUGUGUCUUCUGCCUGAUUUAGGGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUACGCAAAAGGCAGCUCAAUAAUUUGGUCUAUGGGCGAAGUA
...((((((((.(((((((((((((.....((((((.....)))))))))))))).)).))).))))))))..((((((..((.....)).))))))..((((.(((....))).)))). ( -40.50)
>DroEre_CAF1 61013 120 + 1
UAACUUUCGAGUGUGGCUUCUGCCUGAUUUAGCGACACAAUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUAUGCGAAAGGCAGCUCAAUAAUUUGGUCAAAGGAAGAAGUA
...(((((((..(((((((((((((.....((.(((.....))))).)))))))).).))))..)))))))..((((((.(((.....)))))))))..((((..((....))..)))). ( -33.00)
>DroYak_CAF1 62335 120 + 1
UAACUUUCGAUUGUGGCUUCUGCCCGAGUGAGCGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAGAGGUUUGAGUAAGCGAAGGGCAGCUCAAUAAUUUGGUCAAAGGGAGAAGUA
...((((((((.((((((((((((((((.((.(((....)))))))))))))))).).)))).))))))))..((((((..((.....)).))))))....................... ( -37.90)
>consensus
UAACUUUCGAUUGUGGCUUCUGCCUGAUUUAGGGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUAUGCAAAAGGCAGCUCAAUAAUUUGGUCUAUGGGCGAAGUA
...((((((((.(((((((((((((.....((((((.....)))))))))))))).).)))).))))))))..((((((.(((.....)))))))))..((((.(((....))).)))). (-31.68 = -33.12 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:08 2006