| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,883,745 – 7,883,853 |
| Length | 108 |
| Max. P | 0.715166 |
| Location | 7,883,745 – 7,883,853 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 82.16 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -17.05 |
| Energy contribution | -16.22 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715166 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7883745 108 - 22407834 UUACCAU--GUCUGCUUUCCCCUUUAGUUGCGGUCCCAUUUUUGGUGCUGGAGCCGAUCUGCUCAUUUCCAGCAACUGUAAUACAAACAUGGACUCAUACUCGAAUCUUC ...((((--((.((..((......(((((((((..(((....)))..)).((((......)))).......))))))).))..)).)))))).................. ( -26.90) >DroPse_CAF1 60019 105 - 1 UUAUAAU--GUC---UUUUUGUUUCAGUUGUGGACCCAUUUUUGGAGCUGGUGCCGAUCUGCUCAUCUCCAGCAACUGCAAUGCCAACAUGGACUCGUACUCAAAUCUUC .......--(((---(...((((...((((..(..(((....))).(((((.(..((.....))..).)))))..)..))))...)))).))))................ ( -24.90) >DroEre_CAF1 56393 108 - 1 UUCACAU--GUCCUCUUUACCCUUCAGUUGCGGUCCCAUUUUUGGAGCUGGAGCCGAUCUGCUCAUCUCCAGCAACUGCAAUACAAACAUGGACUCCUACUCGAACCUUC .......--((((...........((((((((....).....(((((...((((......))))..))))))))))))............))))................ ( -27.80) >DroYak_CAF1 57734 110 - 1 AUCACAUUUAUUCUCUUUCCCCUUUAGUUGCGGUCCCAUUUUUGGUGCCGGAGCCGAUCUGCUCAUCUCCAGCAACUGCAAUACAAACAUGGACUCCUACUCGAAUCUUC ........................(((((((((..(((....)))..))((((..((.....))..)))).)))))))............(((.((......)).))).. ( -23.20) >DroAna_CAF1 58440 109 - 1 UUAACAU-AAUACCCUUCCACCUACAGUUGCGGACCCAUUUUUGGAGCUGGCGCGGAUCUCCUUAUUUCCAGCAAUUGCAACACUAAUAUGGACUCAUACUCAAACCUGC .......-........((((......(((((((..(((....))).(((((...((....))......)))))..))))))).......))))................. ( -21.52) >DroPer_CAF1 60795 105 - 1 UUAUAAU--GUG---UUUUUGUUUCAGUUGUGGACCCAUUUUUGGAGCUGGUGCCGAUCUGCUCAUCUCCAGCAACUGCAAUGCCAACAUGGACUCGUACUCAAAUCUUC .....((--(.(---((..((((...((((..(..(((....))).(((((.(..((.....))..).)))))..)..))))...))))..))).)))............ ( -26.10) >consensus UUAACAU__GUCC_CUUUCCCCUUCAGUUGCGGACCCAUUUUUGGAGCUGGAGCCGAUCUGCUCAUCUCCAGCAACUGCAAUACAAACAUGGACUCAUACUCAAAUCUUC ..........................(((((((..(((....))).(((((.(..((.....))..).)))))..)))))))............................ (-17.05 = -16.22 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:07 2006