Locus 2782

Sequence ID 2L_DroMel_CAF1
Location 7,880,360 – 7,880,460
Length 100
Max. P 0.581942
window4422

overview

Window 2

Location 7,880,360 – 7,880,460
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 84.47
Mean single sequence MFE -29.11
Consensus MFE -22.14
Energy contribution -23.20
Covariance contribution 1.06
Combinations/Pair 1.19
Mean z-score -1.86
Structure conservation index 0.76
SVM decision value 0.10
SVM RNA-class probability 0.581942
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7880360 100 - 22407834
AUCCAGGCAUUGACCUAGGUCACUAAUGCC-AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUUGAGGGAUGCC---GUCGGCACCUGUCGAAGA
.....(((((((((....))))...)))))-........((((((.................)))))).((((((.((.((((---...)))).)).)))))). ( -31.13)
>DroPse_CAF1 56222 98 - 1
AUCCAGACAUUGACCUAGGUCACAAAUUCAGAUCUUACAAGCAUUCUUAUUAGUG------GGAUGCCUCAUGGAGAGAUCCUCCAACCAUCACCGAACGAGGC
..........((((....)))).........(((((((..............)))------))))(((((.(((((.....)))))..(......)...))))) ( -21.24)
>DroSec_CAF1 53055 100 - 1
AUCCAGGCAUUGACCUAGGUCACUAACGCC-AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUUGAGGGAUGCC---GUCGGCACCUGUCGAAGA
.....(((..((((....)))).....)))-........((((((.................)))))).((((((.((.((((---...)))).)).)))))). ( -27.73)
>DroSim_CAF1 53973 100 - 1
AUCCAGGCAUUGACCUAGGUCACUAACGCC-AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUUGAGGGAUGCC---GUCGGCACCUGUCGAAGA
.....(((..((((....)))).....)))-........((((((.................)))))).((((((.((.((((---...)))).)).)))))). ( -27.73)
>DroEre_CAF1 53076 100 - 1
AUCCAGGCAUUGACCUAGGUCACUAAUGCC-AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUCGAGGGAUGCC---GUCGGCACCUGUCGAAGA
.....(((((((((....))))...)))))-........((((((.................)))))).((((((.((.((((---...)))).)).)))))). ( -33.23)
>DroYak_CAF1 54376 100 - 1
AUCCAGGCAUUGACCUAGGUCACUAAUGCC-AGCUAAACGGGGUUCUCAUCAACAUGAACCUAAUCCCACUUUGAGGGAUGCC---GUCGGCACCUGUCGAAGA
.....(((((((((....))))...)))))-........((((((.((((....))))....)))))).((((((.((.((((---...)))).)).)))))). ( -33.60)
>consensus
AUCCAGGCAUUGACCUAGGUCACUAAUGCC_AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUUGAGGGAUGCC___GUCGGCACCUGUCGAAGA
.....(((((((((....))))...))))).........((((((.................)))))).((((((.((.((((......)))).)).)))))). (-22.14 = -23.20 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:06 2006