Locus 2781

Sequence ID 2L_DroMel_CAF1
Location 7,875,405 – 7,875,555
Length 150
Max. P 0.925820
window4420 window4421

overview

Window 0

Location 7,875,405 – 7,875,499
Length 94
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.32
Mean single sequence MFE -20.53
Consensus MFE -14.15
Energy contribution -14.65
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.69
SVM decision value 0.51
SVM RNA-class probability 0.762506
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7875405 94 - 22407834
UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCGCCAU------UCCAAUCUG---AGGCUCAGUAC--CCCGCC--GAAACUCAAUUGC
.(((((((....)))))))..........(((((((((....)))))))))....------..((((.((---((..((.((..--...)).--))..)))))))). ( -24.40)
>DroSec_CAF1 47233 83 - 1
UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCGCCAU------UCCAAUCUG---AGGCUCAGUA---------------CUCAAUUGC
.(((((((....)))))))..........(((((((((....)))))))))....------..((((.((---((........---------------)))))))). ( -22.00)
>DroSim_CAF1 49000 83 - 1
UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUCUUAUGGUCGCCAU------UCCAAUUUG---AGGCUCGGUA---------------CUCAAUUGC
.(((((((....)))))))..........(((((((((....)))))))))....------..(((((.(---((........---------------)))))))). ( -21.70)
>DroEre_CAF1 48135 96 - 1
UAUGACUUACUUGACUCAUUUUCACACCCCUGCCAUAAUUUGUUAUGGUCGCCAU------UCCAAUCCG---AGGCUCAGUAAUUCCCGCC--GAAACUCAAUUGU
...((.(((((.((.................(((((((....))))))).(((..------.........---.)))))))))).)).....--............. ( -13.20)
>DroYak_CAF1 49358 104 - 1
UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCGCCAUUUCAAUUCCAAUCUG---AGGCUCAGUACCCCCCGUCCGGCAACUCAAUUGC
.(((((((....)))))))..........(((((((((....)))))))))............((((.((---((.....(.((.....)).).....)))))))). ( -21.30)
>DroAna_CAF1 49357 98 - 1
UAUGACUUACUCGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCUCCGA------AUCAAUCUCGGUAAUCUCAGUAC--CCCGCC-GAAAACCCAAUUGC
..((((((....))))))(((((.......((((((((....)))))))).((((------.......))))............--......-)))))......... ( -20.60)
>consensus
UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCGCCAU______UCCAAUCUG___AGGCUCAGUAC__CCCGCC__GAAACUCAAUUGC
.(((((((....)))))))..........(((((((((....)))))))))........................................................ (-14.15 = -14.65 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 7,875,465 – 7,875,555
Length 90
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 89.55
Mean single sequence MFE -16.78
Consensus MFE -11.82
Energy contribution -12.22
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -3.07
Structure conservation index 0.70
SVM decision value 1.17
SVM RNA-class probability 0.925820
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7875465 90 - 22407834
CACGGCUACACCCUUCAU------AUCU-UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC
...((((...........------....-..........((((((((((.....))))))))))(((((((....)))))))...........)))) ( -15.70)
>DroSec_CAF1 47282 90 - 1
CACGGCAACACCCUUCUU------AUCU-UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC
...(((............------....-..........((((((((((.....))))))))))(((((((....)))))))............))) ( -14.80)
>DroSim_CAF1 49049 90 - 1
CACGGCAACACCCUUCUU------AUCU-UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC
...(((............------....-..........((((((((((.....))))))))))(((((((....)))))))............))) ( -14.80)
>DroYak_CAF1 49428 90 - 1
CACGCCAACACCCUUCUU------AUCU-UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC
...(((............------....-..........((((((((((.....))))))))))(((((((....)))))))...........))). ( -15.90)
>DroAna_CAF1 49421 92 - 1
UACAGC-----CCUCCAUUCGGCCAUCGGUGCGUUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUCGAGUCAUUUUCACACCCCGGCC
......-----.........((((...((((((((((........))))))........((...(((((((....)))))))...))))))..)))) ( -22.70)
>consensus
CACGGCAACACCCUUCUU______AUCU_UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC
..(((..................................((((((((((.....))))))))))(((((((....))))))).........)))... (-11.82 = -12.22 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:05 2006