| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,872,811 – 7,872,936 |
| Length | 125 |
| Max. P | 0.990719 |
| Location | 7,872,811 – 7,872,919 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.11 |
| Mean single sequence MFE | -42.90 |
| Consensus MFE | -35.90 |
| Energy contribution | -35.90 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7872811 108 + 22407834 CGUAAAUACUGGGGCUUUGAGU-----G-------UGUGUAGACAUCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA ......(((((..((((.((.(-----(-------(......)))))))))..))))).....(((((((.........)))))))(((..(((((.(((.......)))))))).))). ( -40.90) >DroSim_CAF1 46345 108 + 1 CGUAAAUAGUGGGGCUUUGAGU-----A-------UAUGAAGUCAACAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA ........((..((((((....-----.-------...)))))).))..(((((((..((((.......))))((.(((((((...)))))))))(((((.......)))))))))))). ( -42.20) >DroEre_CAF1 45365 108 + 1 UGCUUGUAUGGGGAUUUUCUGU-----A-------AGCGAAGACAACAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA (((((((.((.((.....)).)-----)-------.)).))).))....(((((((..((((.......))))((.(((((((...)))))))))(((((.......)))))))))))). ( -40.00) >DroYak_CAF1 46586 108 + 1 UGUUCGUAUUGGGAUUUUCAGU-----G-------CAUUAAGUCACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA ........(((((((((.....-----.-------....))))).))))(((((((..((((.......))))((.(((((((...)))))))))(((((.......)))))))))))). ( -41.90) >DroAna_CAF1 45757 99 + 1 AG--CAUGUUGGGAGUU-------------------GUAACGGUACGAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA .(--(((((((((((((-------------------(...(((..(((....)))((.((((.(((((((.........)))))))..)))).)))))....)))))))))))..)))). ( -42.20) >DroPer_CAF1 49181 115 + 1 C-----GACUGGAGCUUCGAGAUGCAAAUCUGAGCUCUUCAGUUAUCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA .-----(((((((((((..((((....))))))))))..))))).....(((((((..((((.......))))((.(((((((...)))))))))(((((.......)))))))))))). ( -50.20) >consensus CGU_AAUAUUGGGACUUUGAGU_____A_______UGUGAAGUCAACAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCA .................................................(((((((..((((.......))))((.(((((((...)))))))))(((((.......)))))))))))). (-35.90 = -35.90 + -0.00)
| Location | 7,872,839 – 7,872,936 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 87.04 |
| Mean single sequence MFE | -36.33 |
| Consensus MFE | -35.90 |
| Energy contribution | -35.90 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.99 |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.989019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7872839 97 + 22407834 AGACAUCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAAAUAACUA----UU-UUUUUA .........(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))..........----..-...... ( -35.90) >DroPse_CAF1 48446 97 + 1 AAUUAUCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAGAAUUAACUUUUUUUU-----G .........(((((((..((((.......))))((.(((((((...)))))))))(((((.......)))))))))))).................-----. ( -35.90) >DroPer_CAF1 49216 97 + 1 AGUUAUCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAGAAUUAACUUUUUUUU-----C (((((....(((((((..((((.......))))((.(((((((...)))))))))(((((.......)))))))))))).....))))).......-----. ( -37.20) >consensus AGUUAUCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAGAAUUAACUUUUUUUU_____A .........(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))....................... (-35.90 = -35.90 + -0.00)
| Location | 7,872,839 – 7,872,936 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 87.04 |
| Mean single sequence MFE | -34.27 |
| Consensus MFE | -33.17 |
| Energy contribution | -33.17 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.97 |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.990719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7872839 97 - 22407834 UAAAAA-AA----UAGUUAUUUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUGAUGUCU ......-..----.((.((((..((((((((((((.......)))))((((((.((...)).)))).)).................)))))))..)))).)) ( -34.80) >DroPse_CAF1 48446 97 - 1 C-----AAAAAAAAGUUAAUUCUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUGAUAAUU .-----............(((..((((((((((((.......)))))((((((.((...)).)))).)).................)))))))..))).... ( -33.00) >DroPer_CAF1 49216 97 - 1 G-----AAAAAAAAGUUAAUUCUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUGAUAACU .-----.......(((((.((..((((((((((((.......)))))((((((.((...)).)))).)).................)))))))..))))))) ( -35.00) >consensus C_____AAAAAAAAGUUAAUUCUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUGAUAACU ..................(((..((((((((((((.......)))))((((((.((...)).)))).)).................)))))))..))).... (-33.17 = -33.17 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:03 2006