Locus 278

Sequence ID 2L_DroMel_CAF1
Location 804,796 – 804,894
Length 98
Max. P 0.892006
window445

overview

Window 5

Location 804,796 – 804,894
Length 98
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 87.78
Mean single sequence MFE -32.93
Consensus MFE -20.86
Energy contribution -22.38
Covariance contribution 1.52
Combinations/Pair 1.08
Mean z-score -3.57
Structure conservation index 0.63
SVM decision value 0.97
SVM RNA-class probability 0.892006
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 804796 98 + 22407834
AACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGAUUCCCUGGCAG---GAAAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCC
.....((((((((((.......(((.(((.....))).)))......))))))))))(((..---(((((((((....)))))))))(((....))).))) ( -34.92)
>DroSec_CAF1 65114 98 + 1
AACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGAUUCCCAGGCAG---GAAAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCC
......(((((((((.......(((.(((.....))).)))......))))))))).(((..---(((((((((....)))))))))(((....))).))) ( -34.42)
>DroSim_CAF1 69977 98 + 1
AACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGACUCCCAGGCAG---GAAAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCC
......(((((((((.......(((.(((.....))).)))......))))))))).(((..---(((((((((....)))))))))(((....))).))) ( -36.82)
>DroEre_CAF1 66170 94 + 1
UACAAAGGGCGUCUUUAAAA--ACUCAACAAUGUGUUUGA-GCAAACAGGAUUC-CUGCCAG---GAAAUGGACGGAAGUUCAUUUCGUGAAAGCUGCGCC
.......(((((......((--((.((....)).)))).(-((...((((...)-))).((.---(((((((((....))))))))).))...)))))))) ( -31.00)
>DroYak_CAF1 69264 99 + 1
CACAAAAAGAGUCUUUAAAG--AUUCAAGAACGUGUUUGAGGCAAACAGGAUUCCCUGCCAGGAGGAAAUGGCCGGAAGUUCAUUUCGUGAAAGCUUCGCC
........((((((....))--))))............(((((...((((....)))).......((((((..(....)..))))))......)))))... ( -27.50)
>consensus
AACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGAUUCCCUGGCAG___GAAAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCC
......(((((((((.......(((.(((.....))).)))......))))))))).........(((((((((....))))))))).............. (-20.86 = -22.38 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:54 2006