Locus 2779

Sequence ID 2L_DroMel_CAF1
Location 7,869,768 – 7,869,873
Length 105
Max. P 0.921550
window4416

overview

Window 6

Location 7,869,768 – 7,869,873
Length 105
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 91.36
Mean single sequence MFE -25.84
Consensus MFE -21.72
Energy contribution -21.76
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.71
Structure conservation index 0.84
SVM decision value 1.14
SVM RNA-class probability 0.921550
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7869768 105 - 22407834
UCACAUUUAUCAUUGACGCUUUAAUGGAUCGCCAGAUGAAAAUGAUCCAUUAUUGAACAUUUCUUCAGUGUAUCUGAGUGAGUG--UUCGAUGGGUAUCUUCACUUC
....(((((((..........((((((((((...........))))))))))..((((((((.(((((.....))))).)))))--))))))))))........... ( -28.60)
>DroSec_CAF1 41530 105 - 1
UCACAUUUAUCAUUGACGCUUUAAUGGAUCGCCAACUGAAAAUGAUCCAUUAUUGACCAUUUCUUCAGUGUAUCUGAGUGAGUG--UGCGAUGGGUAUCUUCACUUC
.........((((((((((((((((((((((...........))))))))))...........(((((.....))))).)))))--).))))))............. ( -24.40)
>DroSim_CAF1 43306 105 - 1
UCACAUUUAUCAUUGACGCUUUAAUGGAUCGCCAGCUGAAAAUGAUCCAUUAUUGACCAUUUCUUCAGUGUAUCUGAGUGAGUG--UGCGAUGGGUAUCUUCACUUC
.........((((((((((((((((((((((...........))))))))))...........(((((.....))))).)))))--).))))))............. ( -24.40)
>DroEre_CAF1 42215 100 - 1
UCACCUUCAUAAUUGACGCUUUAGUGGAUCGCCAGUUAAAAAUGAUCCAUUACUGACCAUUUCUUCAGUGUAUCUGAGUGAGUG--UGCGAUGGGUAUCU-----UC
..(((((((....)))(((..((((((((((...........)))))))))).....(((((.(((((.....))))).)))))--.)))..))))....-----.. ( -24.90)
>DroYak_CAF1 43451 102 - 1
UCGCAUUUAUCAUUGACGCUUUAAUGGAUCGCCAUUUAAAAAUGAUCCAUUAUUGACCAUUUCUUCAGUGUAUCUGAGUGAGUGUGUGCGAUGGGUAUCU-----UC
((((((....((((.((.(..((((((((((...........))))))))))..).........((((.....)))))).)))).)))))).........-----.. ( -26.90)
>consensus
UCACAUUUAUCAUUGACGCUUUAAUGGAUCGCCAGCUGAAAAUGAUCCAUUAUUGACCAUUUCUUCAGUGUAUCUGAGUGAGUG__UGCGAUGGGUAUCUUCACUUC
.........((((((...(..((((((((((...........))))))))))..)..(((((.(((((.....))))).)))))....))))))............. (-21.72 = -21.76 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:00 2006