Locus 2767

Sequence ID 2L_DroMel_CAF1
Location 7,828,285 – 7,828,376
Length 91
Max. P 0.946476
window4398

overview

Window 8

Location 7,828,285 – 7,828,376
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 95.05
Mean single sequence MFE -37.96
Consensus MFE -33.58
Energy contribution -34.34
Covariance contribution 0.76
Combinations/Pair 1.03
Mean z-score -1.61
Structure conservation index 0.88
SVM decision value 1.36
SVM RNA-class probability 0.946476
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7828285 91 + 22407834
CGCUCUUUCCAAUGGGGAGAGGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCGCACAGUAGCGGCGGCUUGC
((((((((((.....))))))((((((.((...(((((.(((.(((((((....))))))).))).))))))).)))).))))))...... ( -40.30)
>DroSec_CAF1 235 91 + 1
CGCUCUUUCCAAUGCGGAGAGGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCGCACAGUAGCGGCGGCUUGC
((((((((((.....))))))((((((.((...(((((.(((.(((((((....))))))).))).))))))).)))).))))))...... ( -40.40)
>DroSim_CAF1 236 91 + 1
CGCUCUUUCCAAUGCGGAGAGGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCGCACAGUAGCGGCGGCUUGC
((((((((((.....))))))((((((.((...(((((.(((.(((((((....))))))).))).))))))).)))).))))))...... ( -40.40)
>DroEre_CAF1 237 91 + 1
CGCUCUUUCCAAUGGGAAGAAGCGCUGAGCGGAGAACGCGAGAGCAUGAUUCAUGUCGUACCCUCUUGCUCACGCAGUAGCGGCGGCUUGC
((((((((((...))))))).(((.(((((((((...((....))(((((....)))))...))).)))))))))....)))......... ( -33.50)
>DroYak_CAF1 234 91 + 1
CGCUCUUUUCAAUGGGAAGACGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCACACAAUAGCGGCGGCUUGC
.((((((((.....)))))).))((((.((.(.(((((.(((.(((((((....))))))).))).))))).)......))..)))).... ( -35.20)
>consensus
CGCUCUUUCCAAUGGGGAGAGGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCGCACAGUAGCGGCGGCUUGC
((((((((((.....)))))))(((((....(.(((((.(((.(((((((....))))))).))).))))).)....))))))))...... (-33.58 = -34.34 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:43 2006