Locus 2765

Sequence ID 2L_DroMel_CAF1
Location 7,821,480 – 7,821,583
Length 103
Max. P 0.500000
window4395

overview

Window 5

Location 7,821,480 – 7,821,583
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 90.19
Mean single sequence MFE -28.12
Consensus MFE -20.53
Energy contribution -21.57
Covariance contribution 1.04
Combinations/Pair 1.10
Mean z-score -1.63
Structure conservation index 0.73
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7821480 103 - 22407834
CAGAGCUCGAAACUUGCACUUGUUGAGAUUUCAGCUGAAAUUGAUGAACUUUUGAAAUAUCGAUAGGGGCCGAAGCGAUAACUCUUAUCGAUAGCCAGCAGGG
............(((((.((((((((.(((((((..(...........)..))))))).))))))))(((.....(((((.....)))))...))).))))). ( -27.30)
>DroSec_CAF1 34005 103 - 1
CAGAGCUCGAAACUUGCACUUGUUGAGAUUUCAGCUAAAAUUGAUGACCUAUUGAAAUAUCGAUAGGGGCCGAAACGAUAACUCUUAUCGAUAGCCAGCAGGG
............(((((....((((......))))............((((((((....))))))))(((.....(((((.....)))))...))).))))). ( -26.40)
>DroSim_CAF1 34567 103 - 1
CAGAGCUCGAAACUUGCACUUGUUGAGAUUUCAGCUGAAAUUGAUGACCUACUGAAAUAUCGAUAGGGGCCGAAGCGAUAACUCUUAUCGAUAGCCAGCAGGG
............(((((.((((((((.(((((((..(...........)..))))))).))))))))(((.....(((((.....)))))...))).))))). ( -29.80)
>DroEre_CAF1 34370 97 - 1
CAGAGCUCGAAUCUUGCACUUGUUGAGAUUUCAGCUGAAAUUUAUGACCUUUUGAUAUAUCGAUAGGG------GCGAUAGCUCUAAUCGAUAGUCAGCAGAG
...((((.(((((((((....).)))))))).))))............((.(((((.(((((((.(((------((....))))).)))))))))))).)).. ( -30.00)
>DroYak_CAF1 37565 103 - 1
CAGAGCUCGAAUCUUGCACUUGUUGAGAUUUCAGCUGAAAUUUAUGACCUAUUGAUAUAUCGAUAGGGACCGCUGCGAUAACUGUUAUCGAUAAUCAGCAGAG
...((((.(((((((((....).)))))))).))))...........((((((((....))))))))....(((((((((.....))))).....)))).... ( -27.10)
>consensus
CAGAGCUCGAAACUUGCACUUGUUGAGAUUUCAGCUGAAAUUGAUGACCUAUUGAAAUAUCGAUAGGGGCCGAAGCGAUAACUCUUAUCGAUAGCCAGCAGGG
............(((((.((((((((.(((((((.................))))))).))))))))(((.....((((((...))))))...))).))))). (-20.53 = -21.57 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:40 2006