Locus 276

Sequence ID 2L_DroMel_CAF1
Location 799,489 – 799,584
Length 95
Max. P 0.517255
window440

overview

Window 0

Location 799,489 – 799,584
Length 95
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 90.63
Mean single sequence MFE -20.44
Consensus MFE -15.78
Energy contribution -15.58
Covariance contribution -0.20
Combinations/Pair 1.10
Mean z-score -1.45
Structure conservation index 0.77
SVM decision value -0.03
SVM RNA-class probability 0.517255
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 799489 95 - 22407834
UCCAACUGAGUGCCCCUG--------CCAGAGUUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA
......(((((.....((--------((.(((......)))(((.....))))))).....)))))(((((..........)))))................. ( -19.30)
>DroSec_CAF1 59211 95 - 1
UCCAACCGAGUGCCCAUG--------CCAGAGUUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCCUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA
.........(((.(((((--------((.(((......)))(((.....))))))))..........(((......)))..)).)))................ ( -19.80)
>DroSim_CAF1 63810 95 - 1
UCCAACCGAGUGCCCAUG--------CCAGAGUUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA
.......((((....(((--------((.(((......)))(((.....))))))))....)))).(((((..........)))))................. ( -20.30)
>DroEre_CAF1 60493 94 - 1
UCCUACCCAAUGCCCAA---------CCAGGGCUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGCCUGCCUUGGCCACAAAUUCCAAAUGCAAA
.......((..((((..---------...))))..))...((((.....))))((((...((((..(((((..........)))))..))))....))))... ( -21.10)
>DroYak_CAF1 63326 103 - 1
UCCAACCCAAAGCCCAUGCCCAUGCCACAGAGUUUUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA
................(((..(((((..(((((((((...)))))))))...)))))...((((..(((((..........)))))..))))......))).. ( -21.70)
>consensus
UCCAACCGAGUGCCCAUG________CCAGAGUUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA
.........(((((...............(((......)))(((.....))))))))...((((..(((((..........)))))..))))........... (-15.78 = -15.58 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:50 2006