Locus 2756

Sequence ID 2L_DroMel_CAF1
Location 7,763,466 – 7,763,565
Length 99
Max. P 0.826074
window4378

overview

Window 8

Location 7,763,466 – 7,763,565
Length 99
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.53
Mean single sequence MFE -29.78
Consensus MFE -17.41
Energy contribution -17.82
Covariance contribution 0.42
Combinations/Pair 1.19
Mean z-score -2.30
Structure conservation index 0.58
SVM decision value 0.70
SVM RNA-class probability 0.826074
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7763466 99 - 22407834
CUCCCAUUUAACGCCCUGCAGCUUCAAACGCUCCGCGUUCUUCUCGCGAGCGGUCUUCAGCUGUUUGGCAA-AAAAAAAGUGGUUUAAACUAAAC----UAAAG
............(((..((((((.....(((((.(((.......))))))))......))))))..)))..-........(((((((...)))))----))... ( -30.00)
>DroSec_CAF1 10957 100 - 1
UUCCCAUUUCACGCCCUGCAGCUUCAAACGCUCCGCGUUCUUCUCGCGAGCGGUCUUCAGCUGUUUGGCAUUAAAAAAAGGGGUUAAAACGAAAC----UGAUG
.((((.(((...(((..((((((.....(((((.(((.......))))))))......))))))..)))......))).))))............----..... ( -29.80)
>DroSim_CAF1 11282 100 - 1
UUCCCAUUUCACGCCCUGCAGCUUCAAACGCUCCGCGUUCUUCUCGCGAGCGGUCUUCAGCUGUUUGGCAUUAAAAAAAGGGGUUAAAACGAAAC----UGAUG
.((((.(((...(((..((((((.....(((((.(((.......))))))))......))))))..)))......))).))))............----..... ( -29.80)
>DroEre_CAF1 11339 96 - 1
CUCCCAUUUCACGCCCUGGAGCUUCAAGCGCUCCGCAUUCUUCUCCCGAGCGGUCUUCAGCUGUUUGGUG----CAAAAGGGGUUAAAACUGAAA----UGAAA
....(((((((.((((((((((.......)))))(((........(((((((((.....)))))))))))----)....)))))......)))))----))... ( -32.30)
>DroYak_CAF1 11484 96 - 1
CUCCCAUUUCACGCCCUGCAGCUUCAAACGCUCCGCAUUCUUUUCCCGAGCGGUCUUUAGCUAUUGGUUA----GAAAAGGGGUUAAAACUUAAG----UAAAG
.((((.((((..(((....((((.....(((((.(.(......).).)))))......))))...)))..----)))).))))............----..... ( -21.30)
>DroAna_CAF1 12757 99 - 1
CUCCCAUUUCACGCCCUGCAGCUUCAGCCGUUCGGCAUUCUUUUCACGAGCGGUUUUUAGCUGUAAGGG-----AAGAAUGGAUUAAGUCUUUAGGAUAUGCAU
...((((((....((((((((((..(((((((((............)))))))))...)))))).))))-----..)))))).....(((.....)))...... ( -35.50)
>consensus
CUCCCAUUUCACGCCCUGCAGCUUCAAACGCUCCGCAUUCUUCUCGCGAGCGGUCUUCAGCUGUUUGGCA____AAAAAGGGGUUAAAACUAAAC____UGAAG
.((((.(((...(((..((((((.....(((((..............)))))......))))))..)))......))).))))..................... (-17.41 = -17.82 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:25 2006