Locus 2755

Sequence ID 2L_DroMel_CAF1
Location 7,754,812 – 7,754,903
Length 91
Max. P 0.505942
window4377

overview

Window 7

Location 7,754,812 – 7,754,903
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 78.95
Mean single sequence MFE -30.32
Consensus MFE -17.76
Energy contribution -17.27
Covariance contribution -0.50
Combinations/Pair 1.26
Mean z-score -1.53
Structure conservation index 0.59
SVM decision value -0.05
SVM RNA-class probability 0.505942
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7754812 91 + 22407834
AAAUUAGCUGCUUUUCUCCUGUGCACUCGAGUUGGCCAAUUGGUUGGUUCGGUGACUCUGACACCGAUUGGCUCCAAUGCAGC-----GCGCUGCC
......(((((....(((..(....)..)))..(((((((((((....((((.....)))).))))))))))).....)))))-----........ ( -28.40)
>DroSec_CAF1 2321 91 + 1
AAAUUUGGUUCUUUUCUCCUGUGCACUCGAGUUGGCCAAUUGUUGGGUUCAGUGGCUCUGACACUGAUUGGCGCCAAUGCAGU-----GCGCUGCC
....................(((((((...((((((.....((..(..((((((.......)))))))..))))))))..)))-----)))).... ( -28.40)
>DroSim_CAF1 2373 91 + 1
AAAUUUGGAGCUUUUCUCCUGUGCACUCGAGUUGGCCAAUUGUUGGGUUCAGUGGCUCUGACACUGAUUGGCGCCAAUGCAGC-----GCGCUGCC
......((((.....)))).((((.((...((((((.....((..(..((((((.......)))))))..))))))))..)).-----)))).... ( -28.40)
>DroEre_CAF1 2516 90 + 1
AAAGUUGGCCCUUUUUUGCGGUGCACUCAACUUGGCCGAUUGUU-GGUUCGGUGACUCUGACACCGAUUGGCGCCAAUGCAGU-----GCGCUGCC
.................((((((((((((..(((((.....((.-.((.(((((.......)))))))..))))))))).)))-----))))))). ( -34.60)
>DroYak_CAF1 2567 90 + 1
AAAGUUGGUAAUUUUCUCCAGUGCACUGAAGUUGGCCGAUUGUU-GGUUCGGUGACUCUGACACCGAUUGGCGCCAAUGCAGU-----GCGCUGCC
..................((((((((((..((((((.....((.-.((.(((((.......)))))))..)))))))).))))-----)))))).. ( -35.90)
>DroAna_CAF1 2464 81 + 1
AAAU--GCUAUUUUU-UUCUCAGUACU-----------UUUGGU-GGUUCAGUGGCUCUGAUACCGAAUGGCGCCGGUGCAGCCGCUGGUGCUGCC
....--.........-....(((((((-----------...(((-((((((.((((.((..........)).)))).)).)))))))))))))).. ( -26.20)
>consensus
AAAUUUGGUACUUUUCUCCUGUGCACUCGAGUUGGCCAAUUGUU_GGUUCAGUGACUCUGACACCGAUUGGCGCCAAUGCAGC_____GCGCUGCC
..................................(((((((....(((((((.....)))).))))))))))......(((((.......))))). (-17.76 = -17.27 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:24 2006