Locus 2754

Sequence ID 2L_DroMel_CAF1
Location 7,751,012 – 7,751,105
Length 93
Max. P 0.539345
window4376

overview

Window 6

Location 7,751,012 – 7,751,105
Length 93
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 82.22
Mean single sequence MFE -33.18
Consensus MFE -18.30
Energy contribution -18.05
Covariance contribution -0.25
Combinations/Pair 1.06
Mean z-score -2.30
Structure conservation index 0.55
SVM decision value 0.01
SVM RNA-class probability 0.539345
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7751012 93 + 22407834
UAUGGCCAAUUGCCAUGGGGCUUGGCUGCCGACACGACACUA-AACAAC-GCGGCAAAAUGUUUCGCUGCCGUUUGUUUAGCUGCCACUUGG---CUC
...((((((..(((....)))))))))(((((...(.(((((-(((((.-((((((...........)))))))))))))).)))...))))---).. ( -34.20)
>DroPse_CAF1 9627 82 + 1
UAUGGCCAAUUGCUAUGGGGCUUGGCUGCCGACACGACACCG-AACAACAGCGGCAAAAA----UGCUGCUGUUUGCU--------GUUUGU---CUC
...((((((..(((....)))))))))...((((.((((.((-(...(((((((((....----)))))))))))).)--------))))))---).. ( -30.90)
>DroSec_CAF1 16264 93 + 1
UAUGGCCAAUUGCCAUGGGGCUUGGCUGCAGACACGACACUA-AACAAC-GCGGCAAAAUGUUUCGCUGCCGUUUGUUUAGCUGCCACUUGG---CCC
((((((.....))))))(((((.((..((((........(((-(((((.-((((((...........))))))))))))))))))..)).))---))) ( -35.40)
>DroSim_CAF1 6745 95 + 1
UAUGGCCAAUUGCCAUGGGGCUUGGCUGCCGACACGACACUA-AACAAC-GCGGCAAAAUGUUUCGCUGCCGUUUGUUUAGCUGCCACUUGGAG-CCC
((((((.....))))))(((((((((((.((...)).))(((-(((((.-((((((...........))))))))))))))..)))).....))-))) ( -33.10)
>DroAna_CAF1 15195 97 + 1
UAUGGCCAAUUGCUUUGGGGCUUGGCUGCCGACACGACACCGGUACAACGGCGGCAAAAUGUUUAGCUGCUGUUUGUUUAGCUGCCACUUGCUGGCC-
...(((((...((..(((((((..(((((((.........))))).(((((((((..........))))))))).))..)))).)))...)))))))- ( -34.60)
>DroPer_CAF1 9583 82 + 1
UAUGGCCAAUUGCUAUGGGGCUUGGCUGCCGACACGACACCG-AACAACAGCGGCAAAAA----UGCUGCUGUUUGCU--------GUUUGU---CUC
...((((((..(((....)))))))))...((((.((((.((-(...(((((((((....----)))))))))))).)--------))))))---).. ( -30.90)
>consensus
UAUGGCCAAUUGCCAUGGGGCUUGGCUGCCGACACGACACCA_AACAAC_GCGGCAAAAUGUUUCGCUGCCGUUUGUUUAGCUGCCACUUGG___CCC
...((((((..(((....)))))))))...................(((.(((((..........))))).)))........................ (-18.30 = -18.05 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:23 2006