Locus 2751

Sequence ID 2L_DroMel_CAF1
Location 7,735,330 – 7,735,450
Length 120
Max. P 0.965860
window4373

overview

Window 3

Location 7,735,330 – 7,735,450
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 74.17
Mean single sequence MFE -36.80
Consensus MFE -22.37
Energy contribution -24.17
Covariance contribution 1.79
Combinations/Pair 1.22
Mean z-score -1.99
Structure conservation index 0.61
SVM decision value 1.59
SVM RNA-class probability 0.965860
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7735330 120 - 22407834
AUUACAGUAUAGCAGCUGUAGUGCCCCUCAUAUAUACCGUGAAUUCAAUACACCCAGUGAUACCCUGGAUGAGUUGCAACAAUAGUUGGAAUACCCAGGAGUGUUCCUUGCACGAGAACU
..((((((......))))))((((...((((.......)))).............((..(((((((((....(((.((((....)))).)))..))))).))))..)).))))....... ( -30.80)
>DroVir_CAF1 12676 120 - 1
ACUAUAGCAUCAAUGCGGCCGUGCCAUUUAUCUAUGCCGUCAAUUCGGUGCGUGAGGUCAUGCCUUGGAUGAGCUGCAAUAAUACGUGGAAUACGCCAGAGUGUUCCACACACGAUCAUU
......(.(((..(((((((((.(((.........((((......))))(((((....)))))..)))))).)))))).......(((((((((......)))))))))....))))... ( -41.00)
>DroMoj_CAF1 12322 120 - 1
ACUAUAGCAUAAAUGCGGCUGUGCCAUUCAUCUAUGCCGUCAAUUCGCUGCGUAAAGUUUUGCCCUGGAUGAGCUGCAACAAUACGUGGAAUACGCCCGAGUGUUCCACGCACAGUGAAU
......(((....))).(((((((..........(((.((..(((((..(((........)))..)))))..)).))).......(((((((((......)))))))))))))))).... ( -38.60)
>consensus
ACUAUAGCAUAAAUGCGGCAGUGCCAUUCAUCUAUGCCGUCAAUUCGAUGCGUAAAGUCAUGCCCUGGAUGAGCUGCAACAAUACGUGGAAUACGCCAGAGUGUUCCACGCACGAUAAAU
......((......))((((((((..........(((.((..(((((..(((........)))..)))))..)).))).......(((((((((......)))))))))))))))))... (-22.37 = -24.17 +   1.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:20 2006