Locus 275

Sequence ID 2L_DroMel_CAF1
Location 792,673 – 792,776
Length 103
Max. P 0.629630
window439

overview

Window 9

Location 792,673 – 792,776
Length 103
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 77.23
Mean single sequence MFE -23.70
Consensus MFE -15.25
Energy contribution -15.37
Covariance contribution 0.11
Combinations/Pair 1.30
Mean z-score -1.31
Structure conservation index 0.64
SVM decision value 0.20
SVM RNA-class probability 0.629630
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 792673 103 + 22407834
CAGGAAAGGAAAGGAAAUGAAAGUGGA--AGGGGAUGAGCUGGGG----AUUUCCCACGAUGACGAGGCGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA
...........................--..........((((((----....)))..((((.((.(((((((((.......))))))))).)))))).....)))... ( -21.10)
>DroSec_CAF1 52444 100 + 1
CAGGAAGGGAAAGGAAAUGAAAGUGGG--AGGGGAUGAGCUGGGG----AUUCCCCACGAUGACGAGGCGGGCUUA---UAAAAGUUUGUCACGAAUUAAAAACAGAAA
......................((.(.--.(((((..........----..))))).).))..((.(((((((((.---...))))))))).))............... ( -19.20)
>DroSim_CAF1 57092 103 + 1
CAGGAAGGGAAAGGAAAUGAAAGUGGG--AGGGGAUGAGCUGGGG----AUUCCCCACGAUGACGAGGCGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA
...........................--.(((((..........----..)))))..((((.((.(((((((((.......))))))))).))))))........... ( -22.20)
>DroEre_CAF1 53816 93 + 1
CAGGAAAGGAA----------AGUGGG--CGGGGAUGAGCUGGGG----AUUCCCCACGGAGACGGGGCGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA
...........----------((((.(--((..((((((((((((----...)))).((....)).....))))))))((((....))))))).))))........... ( -27.80)
>DroYak_CAF1 56217 96 + 1
CAGGAAAGUAA----------AGUGGGGAAGGGGAUGAACUGGGG-C--AUUUCCCACGAUGACGAGACGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA
...........----------.((((((((.((......))....-.--.))))))))((((.((.(((((((((.......))))))))).))))))........... ( -24.80)
>DroAna_CAF1 51655 90 + 1
UCGGCAAGGCGGGAG-----AAGCUGG--CUGGGCUGCGAUGGGGGGAGCUUCUCUA--AUGAUG----GGGCUUAUCAUAAAAGUUUGUCGCGCAUUA------GGAG
........(((.((.-----(((((.(--(......)).((((...(((((((((..--..)).)----)))))).))))...))))).)).)))....------.... ( -27.10)
>consensus
CAGGAAAGGAAAGGA_____AAGUGGG__AGGGGAUGAGCUGGGG____AUUCCCCACGAUGACGAGGCGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA
........................................(((((.......))))).((((.((.(((((((((.......))))))))).))))))........... (-15.25 = -15.37 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:49 2006