Locus 2749

Sequence ID 2L_DroMel_CAF1
Location 7,730,176 – 7,730,283
Length 107
Max. P 0.885868
window4369

overview

Window 9

Location 7,730,176 – 7,730,283
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 80.37
Mean single sequence MFE -29.10
Consensus MFE -23.04
Energy contribution -24.60
Covariance contribution 1.56
Combinations/Pair 1.08
Mean z-score -1.84
Structure conservation index 0.79
SVM decision value 0.94
SVM RNA-class probability 0.885868
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7730176 107 - 22407834
CUUUUACUUUGCCAGCUGCACACAUGCCUUCAGUUCGCUGAUCUUUUCGGAGCUCUCCACCUUUGGAAUACUUCAUGGCGGUUGGCGUAAGUACCCUUAACAAUAGC
....(((((((((((((((.((.......((((....)))).......((((...((((....))))...)))).)))))))))))).))))).............. ( -31.80)
>DroPse_CAF1 13932 95 - 1
CUUUUACUUCGCCAGCUGCACCCAUGCCUUCACCCCGCUGAUGUUCUCGGAACUCCCCACCUUCGGCCUCGUACACGGCGGAUGGGGUAAGUGCC------------
.................((((...(((((.((..((((((.(((.(..((......))..(....)....).))))))))).))))))).)))).------------ ( -23.70)
>DroSim_CAF1 21123 107 - 1
CUUUUACUUUGCCAGCUGCACACAUGCCUUCAGUUCGCUGAUCUUCUCGGAGCUCUCCACCUUUGGAAUACUUCAUGGCGGUUGGCGUAAGUACCAUUAACAAUAGC
....(((((((((((((((.((.......((((....)))).......((((...((((....))))...)))).)))))))))))).))))).............. ( -31.80)
>consensus
CUUUUACUUUGCCAGCUGCACACAUGCCUUCAGUUCGCUGAUCUUCUCGGAGCUCUCCACCUUUGGAAUACUUCAUGGCGGUUGGCGUAAGUACC_UUAACAAUAGC
....(((((((((((((((..........((((....)))).......((((...(((......)))...))))...)))))))))).))))).............. (-23.04 = -24.60 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:16 2006