| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,727,975 – 7,728,065 |
| Length | 90 |
| Max. P | 0.959801 |
| Location | 7,727,975 – 7,728,065 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 72.16 |
| Mean single sequence MFE | -19.05 |
| Consensus MFE | -12.81 |
| Energy contribution | -12.57 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.959801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7727975 90 - 22407834 CAU------ACUG-UA---AU-----ACA-UAAU--UAUCCA-UUUCAGUUGGGCUUUAGUCAGCUGACUCAGCUGCCAAAUUUGGCAGUGUUUACACACUUGCUUAUU ...------..((-((---(.-----((.-....--......-..((((((((.(....)))))))))....(((((((....))))))))))))))............ ( -22.00) >DroVir_CAF1 10755 90 - 1 ---------ACUC-GU---UU-----AUCUAAUUUCUCUCAC-CUACAGAGGGGCUUCAGGCAAGUUAGCGCCCUGUCCUACAUGUCGCUGUUUACACAGAUCAUUAUC ---------....-..---..-----.........((((...-....))))((((....(((........)))..))))...(((...((((....))))..))).... ( -14.50) >DroSec_CAF1 16531 96 - 1 CAU------ACUAAUA---AUAACUAAUA-UAAC--UAUCCA-UUUCAGUUGGGCUUUAGUCAGCUGACUCAGUUGCCAAAUUUGGCGGUGUUUACACACUUGCUUAUU ...------.......---..........-....--......-..((((((((.(....))))))))).......((((....))))(((((....)))))........ ( -16.50) >DroSim_CAF1 18934 90 - 1 CAU------ACUA-UA---AU-----AUA-UAAC--UAUUCA-UUUUAGUUGGGCUUCAGUCAGCUGACUCAGCUGCCAAAUUUGGCGGUGUUUACACACUUGCUUAUU ...------....-..---..-----...-....--......-....(((((((..((((....)))))))))))((((....))))(((((....)))))........ ( -19.40) >DroEre_CAF1 13997 89 - 1 CAU------UCUA-UA---AU-----AUU--GAA--UUUCCA-UUUCAGUUGGGUUUCAGUCAGCUGACUCAGCUGCCAAAUUUGGCGGUGUUUACACACUUGCUUUUU ...------....-..---..-----..(--(((--(..((.-....(((((((..((((....)))))))))))((((....)))))).))))).............. ( -20.00) >DroYak_CAF1 11169 99 - 1 CCUUUUCUAUCUA-UAUAUAU-----AUU--AAU--UUUCCCUUUUCAGUUGGGCUUUAGUCAGCUGACUCAACUGCCAAAUUUGGCUGUGUUCACACAGCUGCUUAUU .............-.......-----...--...--..........((((((((..((((....))))))))))))........(((((((....)))))))....... ( -21.90) >consensus CAU______ACUA_UA___AU_____AUA_UAAU__UAUCCA_UUUCAGUUGGGCUUCAGUCAGCUGACUCAGCUGCCAAAUUUGGCGGUGUUUACACACUUGCUUAUU ..............................................((((((((..((((....))))))))))))........((((((((....)))).)))).... (-12.81 = -12.57 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:14 2006