Locus 2743

Sequence ID 2L_DroMel_CAF1
Location 7,716,126 – 7,716,238
Length 112
Max. P 0.575706
window4360

overview

Window 0

Location 7,716,126 – 7,716,238
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.81
Mean single sequence MFE -24.20
Consensus MFE -23.06
Energy contribution -22.88
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.28
Structure conservation index 0.95
SVM decision value 0.08
SVM RNA-class probability 0.575706
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7716126 112 - 22407834
UCUUAAUCAUUUCU--------UAUUUCAGUUGUUGGUAUGCUGCCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUACCAAUCCUGGUCGUUCAUUCCUUCAUGGGACAGUUCUCCAGCA
..............--------.........((((((...((((((((((.......))))))(((.(.(((.((.......)).))).).))).((((....))))))))...)))))) ( -23.80)
>DroSec_CAF1 4600 112 - 1
CCUUAAUCAUUUCU--------UAUUUCAGUUGUUGGUAUGCUGCCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUACCAAUCCUGGUCGUUCAUUCCUUCAUGGGACAGUUCUCCAGCA
..............--------.........((((((...((((((((((.......))))))(((.(.(((.((.......)).))).).))).((((....))))))))...)))))) ( -23.80)
>DroSim_CAF1 5128 112 - 1
UCUUAAUCAUUUAU--------UAUUUCAGUUGUUGGUAUGCUGCCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUACCAAUCCUGGUCGUUCAUUCCUUCAUGGGACAGUUCUCCAGCA
..............--------.........((((((...((((((((((.......))))))(((.(.(((.((.......)).))).).))).((((....))))))))...)))))) ( -23.80)
>DroEre_CAF1 5229 120 - 1
UUUAAAACAUUUCAUUUGGUCCCAUUUCAGUUGUUGGCAUGCUACCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUUCCAAUCCUGGUCGUUCAUUCCUACAUGGGACAGUUCUCCAGCA
..................(((((((...((..((..((.....(((((((.......)))))))((((...(((....)))....))))))..))..))..)))))))............ ( -25.40)
>consensus
UCUUAAUCAUUUCU________UAUUUCAGUUGUUGGUAUGCUGCCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUACCAAUCCUGGUCGUUCAUUCCUUCAUGGGACAGUUCUCCAGCA
...............................((((((...((((((((((.......)))))))((((...(((....)))....))))......((((....)))).)))...)))))) (-23.06 = -22.88 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:07 2006