Locus 2740

Sequence ID 2L_DroMel_CAF1
Location 7,710,822 – 7,710,919
Length 97
Max. P 0.500000
window4353

overview

Window 3

Location 7,710,822 – 7,710,919
Length 97
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 74.98
Mean single sequence MFE -23.96
Consensus MFE -7.40
Energy contribution -7.56
Covariance contribution 0.16
Combinations/Pair 1.24
Mean z-score -1.68
Structure conservation index 0.31
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7710822 97 - 22407834
UAAACGAGCGAGUGAACAUGAGUUUG----------UUUCUGUCAAGAGAGGAGCAUGUUUAAAGCACUCGAGUACAACAGAGCGUAUGAGUUUU----ACAUCUGGCAAA
....((((.(..((((((((...((.----------(((((....))))).)).))))))))...).)))).......((((..(((.......)----)).))))..... ( -26.10)
>DroSec_CAF1 3491 95 - 1
UAAACGAGCGAGUGAGUGUGAGAUUG----------UUUCUGUCAAG--AGGAACAUGUUUAAAGCACUCGAGUACAACAGAGCGUAUGAGUAAU----ACAUCUCGCAAA
.......((((((((((((.((((((----------(((((......--))))))).))))...))))))).............((((.....))----))..)))))... ( -27.50)
>DroSim_CAF1 3178 95 - 1
UAAACGAGCGAGAGAAUGUGAGAUUG----------UUUCUGUCAAG--AGGAACAUGUUUAAAGCACUCGAGUACAACAGAGCGUAUGAGUUAU----ACAUGUCGCAAA
...((...((((.(....((((..((----------(((((......--)))))))..))))...).)))).))........(((((((......----.)))).)))... ( -19.40)
>DroEre_CAF1 3480 89 - 1
CAAACGAGCGAGUGAACGUGAACUUGUGAGUU---AUUUCUGUCAAG--AGAAACAAGU-CGAAACACUCGAGUACAACAGAGCGUAUGAGUUUU----------------
.((((...((((((....(((.(((((.....---.(((((....))--))).))))))-))...)))))).((((........))))..)))).---------------- ( -19.40)
>DroYak_CAF1 3503 103 - 1
------AGCGAGUAAAUUUGAGUUUGUGAGCUUGUUUUUCUGUCAAG--UGCAACAUGUUCAAAACACUCGUGUACAACAGAGCGUAUGAGUAAUGGAUACAUCGCGAAAA
------.(((((((..((((((..(((..(((((.........))))--)...)))..))))))..(((((((..(......)..)))))))......))).))))..... ( -27.40)
>consensus
UAAACGAGCGAGUGAAUGUGAGAUUG__________UUUCUGUCAAG__AGGAACAUGUUUAAAGCACUCGAGUACAACAGAGCGUAUGAGUUAU____ACAUCUCGCAAA
........((((((....((((..((..........(((((........)))))))..))))...)))))).((((........))))....................... ( -7.40 =  -7.56 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:00 2006