Locus 2738

Sequence ID 2L_DroMel_CAF1
Location 7,703,400 – 7,703,512
Length 112
Max. P 0.939871
window4351

overview

Window 1

Location 7,703,400 – 7,703,512
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 96.61
Mean single sequence MFE -27.30
Consensus MFE -24.74
Energy contribution -25.02
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.91
SVM decision value 1.30
SVM RNA-class probability 0.939871
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7703400 112 - 22407834
UUUAAUCUGCCGUCUUGUUUCGGUCUUGUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCUUC
.......(((((((.(((...((((((((((........)))))(((((.((...((..(.(((((....)))))).))...)).)))))))))).))).)))))))..... ( -27.10)
>DroSec_CAF1 48349 112 - 1
UUUCAUCUGCCGUCUUGUUUCGGUCUUUUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCUUC
.......(((((((.(((...(((((...(((((((((((....)))))))....(((((......))))).......))))........))))).))).)))))))..... ( -24.60)
>DroSim_CAF1 48791 112 - 1
UUUCAUCUGCCGUCUUGUUUCGGUCUUGUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCUUC
.......(((((((.(((...((((((((((........)))))(((((.((...((..(.(((((....)))))).))...)).)))))))))).))).)))))))..... ( -27.10)
>DroEre_CAF1 58390 111 - 1
UUUCAUCUGCCGUCUUGU-UCGGUCUUGUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUGAUUUCAUGAUUACAUGUUGUUAAUUACAGAUCUUCAUGGCGGCAUCGUC
.......(((((((.((.-..((((((((((........)))))(((((....(....)..((((..((((....))))..))))))))))))))..)).)))))))..... ( -29.30)
>DroYak_CAF1 50569 112 - 1
UUUCAUCUGCCGUCUUGUUUCGGUCUUGUCAGCUUAUUAUGACAGCAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCGUC
.......(((((((.(((...(((((.((((........))))(((((((.....(((((......)))))......)))))))......))))).))).)))))))..... ( -28.40)
>consensus
UUUCAUCUGCCGUCUUGUUUCGGUCUUGUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCUUC
.......(((((((.(((...((((((((((........)))))(((((.((...((..(.(((((....)))))).))...)).)))))))))).))).)))))))..... (-24.74 = -25.02 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:58 2006