| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,692,363 – 7,692,460 |
| Length | 97 |
| Max. P | 0.723682 |
| Location | 7,692,363 – 7,692,460 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 78.77 |
| Mean single sequence MFE | -25.61 |
| Consensus MFE | -16.54 |
| Energy contribution | -16.85 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7692363 97 + 22407834 CUGAAUUUCAGUCUCAAGUUCGCCAAAGGCACCUGGACUUAGCAUCAGGUGUAACUCAUCCUUGGCUUCAUGCCACAACCUGAACUGAG-UGAA-AAGG .....(((((..((((.((((.......((((((((........))))))))..........((((.....))))......))))))))-))))-)... ( -27.10) >DroGri_CAF1 48303 99 + 1 UUUUAAUUGUCUUUCAAAUUGUGGCAAGGCAUCUGGUUUUACCAUUAAAUGCAGCUCAUUAUUGUUCUCAUUCCACAAUCUGAACUAUUGUGGAUAUUU .......((.....(((...(((((...((((.(((.....)))....)))).)).)))..)))....)).((((((((.......))))))))..... ( -17.80) >DroSec_CAF1 37006 97 + 1 CCGAAUUUCAGUCUCGAAUUCGCCAAAGGCACCUGAACUUAGCAUCAGGUGUAACUCAUCCUUGGCUUCAUGCCACAGCCUGAACUGAG-UGAA-CAGG ..((((((.......))))))(((...))).((((.((((((..((((((............((((.....))))..)))))).)))))-)...-)))) ( -28.74) >DroSim_CAF1 37730 97 + 1 CUGAAUUUCAUUCUCAAAUUCGGCAAAGGCACCUGGACUUAGCAUCAGGUGUAACUCAUCCUUGGCUUCAUGCCACAGUCUGAACUGAG-UGAA-AAGG .....((((((((.....((((((....((((((((........))))))))..........((((.....))))..).)))))..)))-))))-)... ( -27.30) >DroEre_CAF1 45516 97 + 1 CUGAAGCUCAGUUCCGAGUUCGCCAAACGCACCUGGACUCACCAUCAGGUGUAGCUCAUCCUUGGCUUCGUGCCACAGCCUGAACUGAA-UGGA-AAUG .......(((((((.(((((........((((((((........))))))))))))).....((((.....))))......))))))).-....-.... ( -28.00) >DroYak_CAF1 38400 97 + 1 CCGCAUUUCAGUCUCGAGUUCGCCAAAAGCACCUGGACUUAGCAUCAGGUGUAACUCAUCCUUGGCCUCAUGCCACAACCUAAACUGAA-UGAA-AAGG ((.((((.((((...(((((........((((((((........))))))))))))).....((((.....))))........))))))-))..-..)) ( -24.70) >consensus CUGAAUUUCAGUCUCAAAUUCGCCAAAGGCACCUGGACUUAGCAUCAGGUGUAACUCAUCCUUGGCUUCAUGCCACAACCUGAACUGAG_UGAA_AAGG .......(((((.(((.(((........((((((((........))))))))..........((((.....)))).))).))))))))........... (-16.54 = -16.85 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:57 2006