Locus 2736

Sequence ID 2L_DroMel_CAF1
Location 7,686,629 – 7,686,749
Length 120
Max. P 0.542931
window4349

overview

Window 9

Location 7,686,629 – 7,686,749
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.00
Mean single sequence MFE -49.77
Consensus MFE -24.88
Energy contribution -24.92
Covariance contribution 0.03
Combinations/Pair 1.42
Mean z-score -1.81
Structure conservation index 0.50
SVM decision value 0.02
SVM RNA-class probability 0.542931
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7686629 120 + 22407834
AGCUCCACGCAAUCCGCGGUCGCCACCCGCUUAGGUUGGACAUUCACCUGAUGGAUGGGCAGCAGAGAAGAUUGCAGGUGGAUGCGGCCAGUACAGCUCGAGAGGCAGUCAAUCAACUUU
.(((((((((((((.((((.......))))....((((..((((((.....))))))..))))......))))))..))))).))..........((.(....))).............. ( -36.60)
>DroPse_CAF1 29690 120 + 1
AGCUGCAGGCCAUCCGUGGCCGCCAGCCCCUGAAGCUGGACAUUCACCUGAUGGACGGAGAGACGCGUCGACUGCAGGUGGAUGCCGCCAGCACGGCCAGGGAGGCCGUGCAGCAGCUGU
.((((((((((.(((.((((((.(((...)))..(((((.((((((((((.(.((((........)))).)...))))))))))...))))).)))))).))))))).))))))...... ( -69.50)
>DroGri_CAF1 40574 120 + 1
AGCUCCAAGCGAUUCGCAGUCGCCAGCCGCUGAAGCUAGCGAUUCAUUUGAUGGAUGGACAGGUGCUGAAGUUGCAAGUGGAUGCAGCCAGCACGGCUCGCGAGGCAGUGCAGCAAUUGU
.((((((.((((((..(((.((((...(((((....))))).((((((.....))))))..))))))).))))))...)))).)).((..((((.((.(....))).)))).))...... ( -43.40)
>DroMoj_CAF1 34241 120 + 1
AGCUGCAGGCGAUUCGAAGUCGGCAGCCCCUAAAGCUGGCUAUUUAUUUGACGGACGGCCAGGCGCGCAAAUUGCAGGUGGAUGCAGCCAGCACAGCCCGAGAGGCAGUGCAGCAGCUGA
((((((.((((((.....))).(((.(((((....(((((..(((.......)))..)))))....((.....))))).)).))).))).((((.(((.....))).)))).)))))).. ( -49.20)
>DroAna_CAF1 35532 120 + 1
AACUUCAAGCUAUAAGGGAGCGUCUUCCCCUGAAACUGGACAUUCAUCUGAUGGAUGGACAGCAGCGAAGACUGCAGGUGGAUGCAGCUAGCACGGCUCGAGAGGCAGUGAAUCAACUGU
...(((.((((.......(((((((((..(((...(((..(((((((...)))))))..)))))).))))))((((......))))))).....)))).)))..(((((......))))) ( -37.00)
>DroPer_CAF1 32921 120 + 1
AGCUGCAGGCCAUCCGCGGACGCCAGCCCCUGAAGCUGGACAUUCACCUGAUGGACGGAGAGACGCGUCGACUGCAGGUGGAUGCCGCCAGCACGGCCAGGGAGGCCGUGCAGCAGCUGU
((((((.........((((...(((((.......))))).((((((((((.(.((((........)))).)...))))))))))))))..((((((((.....)))))))).)))))).. ( -62.90)
>consensus
AGCUGCAGGCCAUCCGCGGUCGCCAGCCCCUGAAGCUGGACAUUCACCUGAUGGACGGACAGACGCGAAGACUGCAGGUGGAUGCAGCCAGCACGGCCCGAGAGGCAGUGCAGCAACUGU
.((((((...........................(((((.((((((((((.....((........)).......))))))))))...)))))...(((.....)))..))))))...... (-24.88 = -24.92 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:56 2006