Locus 2731

Sequence ID 2L_DroMel_CAF1
Location 7,670,900 – 7,670,998
Length 98
Max. P 0.555131
window4344

overview

Window 4

Location 7,670,900 – 7,670,998
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 90.14
Mean single sequence MFE -30.37
Consensus MFE -25.52
Energy contribution -26.30
Covariance contribution 0.78
Combinations/Pair 1.19
Mean z-score -1.65
Structure conservation index 0.84
SVM decision value 0.04
SVM RNA-class probability 0.555131
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7670900 98 + 22407834
AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGUACCGGAAGCGGAAGUUGUUGCUCGCAUGUCGAACGGAUCAACAC
......((((((...((((.((((.(((((((.....))))))).)))).(((((.....(((....)))..)))))))))......))))))..... ( -26.30)
>DroSec_CAF1 16013 98 + 1
AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGCAGCGGAAGCGGAAGUUGUUGUUCGCAUGUCGAACGGAUCAACAC
......((((((...((((.((((.(((((((.....))))))).)))).((((((((...((....))))))))))))))......))))))..... ( -29.60)
>DroSim_CAF1 16134 98 + 1
AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGCAGCGGAAGCGGAAGUUGUUGCUCGCAUGUCGAACGGAUCAACAC
......((((((...((((.((((.(((((((.....))))))).)))).((((((((...((....))))))))))))))......))))))..... ( -32.00)
>DroEre_CAF1 24355 98 + 1
AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGCAGCGGAAGCGGAAGUUGUUGCUCGCAUGUCGAACGGAUCAACAC
......((((((...((((.((((.(((((((.....))))))).)))).((((((((...((....))))))))))))))......))))))..... ( -32.00)
>DroYak_CAF1 16839 98 + 1
AUUUGGGGCCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGCUUCGAGCAGCGGAAACGGAAGUUGUUGCUCGCAUGUCGAAUGGAUCAACAC
((((((((....)).((((.((((.(((((((.....))))))).)))).((((((((...((....)))))))))))))).)))))).......... ( -31.70)
>DroAna_CAF1 19604 95 + 1
GUUGCGCCUCUGCCAAUUCGGAGCGGAAAUAUGAUUUGUGUUUCAGCAUUGAGUACCGGAAACGGAAGU---UGCUCGCAUGUCGGAGCGAAACACAC
.((.(((.((((......))))))).))........((((((((...........(((....)))....---.((((........)))))))))))). ( -30.60)
>consensus
AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGCAGCGGAAGCGGAAGUUGUUGCUCGCAUGUCGAACGGAUCAACAC
......((((((...((((.((((.(((((((.....))))))).)))).((((((((...((....))))))))))))))......))))))..... (-25.52 = -26.30 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:51 2006