Locus 273

Sequence ID 2L_DroMel_CAF1
Location 789,034 – 789,135
Length 101
Max. P 0.542562
window436

overview

Window 6

Location 789,034 – 789,135
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 91.72
Mean single sequence MFE -29.10
Consensus MFE -21.91
Energy contribution -21.91
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -1.63
Structure conservation index 0.75
SVM decision value 0.02
SVM RNA-class probability 0.542562
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 789034 101 + 22407834
UAGGCGGUGUGACCCAAAAACAUAGCAUAGAUAAAGCCGUAGCCGAAAGGCAAAUCCAAAUCCGUGGCGCCACCCCAGCAAUUGGACCUAGUCAUGGAGUU-
..(((.((((.........))))............)))...(((....))).........((((((((.....((.(....).)).....))))))))...- ( -26.22)
>DroSec_CAF1 48826 99 + 1
UAGGCGGUGUGACCCAAAAAC--GGCAUAGAUAAAGCCGUAGCCAAAAGGCAAAUCCAAAUCCGUGGCGCCUCCUCAGAAAUGGGAGCUAGUCAUGGAGUU-
..(((((......))....((--(((.........))))).)))....((.....))...((((((((..((((.((....))))))...))))))))...- ( -34.70)
>DroSim_CAF1 53267 99 + 1
UAGGCGGUGUGACCCAAAAAC--GGCAUAGAUAAAGCCGUAGCCAAAAGGCAAAUCCAAAUCCGUGGCGCCUCCUCAGAAAUGGGAGCUAGUCAUGGAGUU-
..(((((......))....((--(((.........))))).)))....((.....))...((((((((..((((.((....))))))...))))))))...- ( -34.70)
>DroEre_CAF1 50302 97 + 1
UUGGCGGUGUGACCCAAAAAU--GGCAUAGAUAAAGCCGUACCCAAAAGGCAAAUCCAAAUCCAUGGC-CCUCCCCAGAAAUCGGACCUAGUCAUGGAGU--
((((...(((.........((--(((.........))))).........)))...)))).((((((((-....((.(....).)).....))))))))..-- ( -22.07)
>DroYak_CAF1 52574 100 + 1
UCGGCGGUGUGACCCAAAAAC--GGCAUAGAUAAGGCCGUAGCCAAAAGGCAAAUCCAAAUCCGUGGCGCCUCCCCAGAAAUUGGCCCUAGUCAUGGAGUUU
..((.(((((.((......((--(((.........))))).(((....)))............)).))))).))(((.....((((....)))))))..... ( -27.80)
>consensus
UAGGCGGUGUGACCCAAAAAC__GGCAUAGAUAAAGCCGUAGCCAAAAGGCAAAUCCAAAUCCGUGGCGCCUCCCCAGAAAUGGGACCUAGUCAUGGAGUU_
...((((((((.((.........))))).......))))).(((....))).........((((((((.....((........)).....)))))))).... (-21.91 = -21.91 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:46 2006