Locus 2727

Sequence ID 2L_DroMel_CAF1
Location 7,662,347 – 7,662,446
Length 99
Max. P 0.990412
window4340

overview

Window 0

Location 7,662,347 – 7,662,446
Length 99
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 81.71
Mean single sequence MFE -24.32
Consensus MFE -12.11
Energy contribution -11.95
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -3.48
Structure conservation index 0.50
SVM decision value 2.21
SVM RNA-class probability 0.990412
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7662347 99 - 22407834
UGUGACUUUCAAUCUUCG-UUUGCCCAAGCACUAUUGAAAGGUCU------AUAGAAUUAAGUCACCUUUGAUUUAAACUCGUGAUCAUUAAUCACUUAAAUCAAA
.(((((((.........(-(((....)))).((((.((....)).------))))....)))))))..(((((((((....(((((.....)))))))))))))). ( -20.90)
>DroSec_CAF1 7414 99 - 1
CGUGACUUUCAAUCUUCG-CUUGCCCAAGCACUAUUGAAAGGUCU------AUGGAAAUAAGUCACAUUUGAUUUAAACUCAUGGCCAUUAAUCACUUAAAUCAUA
.((((.(((((((....(-(((....))))...)))))))((.((------((((...(((((((....)))))))...)))))))).....)))).......... ( -23.70)
>DroSim_CAF1 7383 99 - 1
UGUGACUUUCAAUCUUCG-CUUGCCCAAGCACUAUUGAAAGGUCU------AUGGAAAUAAGUCACAUUUGAUUUAAUCUCAUGGUCAUUAAUCACUUAAAUCAUA
.((((((((((((....(-(((....))))...))))))))(.((------(((..(.(((((((....))))))).)..))))).).....)))).......... ( -25.80)
>DroEre_CAF1 15837 99 - 1
UGUGACUUUCAAUCUACCUUUUUCCCAAGCACU-------GGUCUUGUGUACCAGAAACAAGUCACAUUUGAUUUGAGACCAUGAUCAUUUAUCGCUUAAAUCAAA
((((((((.........(((......)))..((-------((((....).)))))....))))))))(((((((((((.(.((((....)))).)))))))))))) ( -24.90)
>DroYak_CAF1 7806 106 - 1
UGUGACUUUCCAUCUACGAUUUACGCAAGCACUAUUGAAAGGUCUUGUGUUAUGGAAAUAUGUCACAUUUGAUUUAAACUCAUGAUCAUUUAUCACUUAAAUCGAA
(((((((((((((.........(((((((.(((.......)))))))))).)))))))...))))))((((((((((....((((....))))...)))))))))) ( -26.30)
>consensus
UGUGACUUUCAAUCUUCG_UUUGCCCAAGCACUAUUGAAAGGUCU______AUGGAAAUAAGUCACAUUUGAUUUAAACUCAUGAUCAUUAAUCACUUAAAUCAAA
.(((((((....(((............((.(((.......)))))........)))...))))))).((((((((((.....((((.....)))).)))))))))) (-12.11 = -11.95 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:47 2006