| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,653,984 – 7,654,078 |
| Length | 94 |
| Max. P | 0.506280 |
| Location | 7,653,984 – 7,654,078 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 80.20 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -19.19 |
| Energy contribution | -18.56 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7653984 94 + 22407834 ------UCGAUU-------GGCGGCGAACUGAAGUU-----GAAAUAUUCGGAUGCCGCGCGUAAUUAACGUGCUCGUGUGUGAAAUUUUUUAUUGCAUACUUUGCGGCACU-- ------((((.(-------(.((((........)))-----)...)).)))).((((((((((.....))))))..(((((..(.........)..))))).....))))..-- ( -27.00) >DroSim_CAF1 3067 94 + 1 ------UCGAUU-------GGCGGCGAACUGAAGUU-----GAAAUAUUCGGAUGCCGCGCGUAAUUAACGUGCUCGUGUGUGAAAUUUUUUAUUGCAUACUUUGCGGCACU-- ------((((.(-------(.((((........)))-----)...)).)))).((((((((((.....))))))..(((((..(.........)..))))).....))))..-- ( -27.00) >DroEre_CAF1 3055 94 + 1 ------UCUAUU-------GGCGGGGAACUGAAGUU-----GAAAUAUUCGGAUGCCGCGCGUAAUUAACGUGGUCGUGUGUGAAAUUUUUUAUUGCAUACUUUGCGGCACU-- ------((.(((-------..(((....))).))).-----))..........((((((((((.....))))....(((((..(.........)..)))))...))))))..-- ( -24.70) >DroWil_CAF1 2891 104 + 1 GUAUUUUUGAUUGAGAAGAGGCGGUGCAC--GAGUU-----GUUGCCUU---UCGCUUCGCGUAAUUAACGUGCUCGAGUGUGAAAUUUUUUAUUGCAUACUUUGCAGCGCGGC ......(((((((....(((((((.(((.--.....-----..)))...---)))))))...)))))))((((((((((((((.(((.....))).))))).))).)))))).. ( -31.00) >DroYak_CAF1 3028 94 + 1 ------UCGAUU-------GGCGGGGAACUGAAGUU-----GAAAUAUUCGGAUGCCGCGCGUAAUUAACGUGCUCGUGUGUGAAAUUUUUUAUUGCAUACUUUGCGGCACU-- ------((((((-------..(((....))).))))-----))..........((((((((((.....))))))..(((((..(.........)..))))).....))))..-- ( -28.80) >DroAna_CAF1 2821 99 + 1 ------GCAGGU-------GGGGAUCGGUUGAAGUUAUUCAAAAAUGUUUGGAUGUUGCGCGUAAUUAACGUGCUCGUGUGUGAAAUUUUUUAUUGCAUACUUUGCAGCACU-- ------(((((.-------...........((...((((((((....))))))))..((((((.....))))))))(((((..(.........)..))))))))))......-- ( -21.60) >consensus ______UCGAUU_______GGCGGCGAACUGAAGUU_____GAAAUAUUCGGAUGCCGCGCGUAAUUAACGUGCUCGUGUGUGAAAUUUUUUAUUGCAUACUUUGCGGCACU__ ............................(((((..............))))).((((((((((.....))))....(((((..(.........)..)))))...)))))).... (-19.19 = -18.56 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:45 2006