Locus 2722

Sequence ID 2L_DroMel_CAF1
Location 7,647,340 – 7,647,454
Length 114
Max. P 0.970294
window4335

overview

Window 5

Location 7,647,340 – 7,647,454
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.78
Mean single sequence MFE -18.60
Consensus MFE -15.31
Energy contribution -15.81
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.58
Structure conservation index 0.82
SVM decision value 1.66
SVM RNA-class probability 0.970294
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7647340 114 - 22407834
CUACACCAA---ACCCAUCAUCUA---UUACACACAUACCGAUCCGCUCUUGAAUGUCUCUCAACGUUCAUUUUUGUUUAUAUUACCUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUC
......(((---(..((.......---.((((((((((..((.....)).(((((((......))))))).................))))))))))...))..))))............ ( -17.60)
>DroPse_CAF1 187780 120 - 1
UUCCACCAAACAACCCAUCAUCUGAUACUCCACACAUACCGAUCCGCUCUUGAAUGUCUAUCAACGUUCAUUUUCGUUUAUCUAACAUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUU
.......((((((..((((....)))....((((((((............(((((((......))))))).....(((.....))).)))))))).)..))))))............... ( -19.10)
>DroAna_CAF1 158865 114 - 1
CUACACCAA---ACCCAUCAUCUU---CUACACACAUACAGAUCCGCUCUUGAAUGUCUAUCAACGUUCAUUUUUGUUUACAUUACCUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUC
.........---....((((....---(.(((((((((.((.........(((((((......)))))))....((....))....)).)))))))))...)....)))).......... ( -18.60)
>DroPer_CAF1 184646 120 - 1
UUCCACCAAACAACCCAUCAUCUGAUACUCCACACAUACCGAUCCGCUCUUGAAUGUCUAUCAACGUUCAUUUUCGUUUAUCUAACAUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUU
.......((((((..((((....)))....((((((((............(((((((......))))))).....(((.....))).)))))))).)..))))))............... ( -19.10)
>consensus
CUACACCAA___ACCCAUCAUCUG___CUACACACAUACCGAUCCGCUCUUGAAUGUCUAUCAACGUUCAUUUUCGUUUAUAUAACAUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUC
................((((.........(((((((((..((.....)).(((((((......)))))))...................)))))))))........)))).......... (-15.31 = -15.81 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:42 2006